Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G12
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical pr...    81   5e-16
U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical
           protein M153.1 protein.
          Length = 279

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
 Frame = +3

Query: 240 MKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPLDVASAEAFKGIGATALFENKXXX 419
           MKIGFIG G++A ALA G I++G    D I AS    D    +  K +G     +N    
Sbjct: 1   MKIGFIGAGKMAQALARGLINSGRITADNIIASSPKRDEVFLDQCKALGLNTTHDNAEVV 60

Query: 420 XXXXXXXXXXXXXXXXPALKEIKDVPA-AKNKLFITVAMGVNTATVEKILPAEARVIRVM 596
                               EI   PA +K  L +++A+G+    +E +LP ++RV+RVM
Sbjct: 61  QKSDVVFLAVKPVHVSKVASEI--APALSKEHLVVSIALGITIRNIESLLPTKSRVVRVM 118

Query: 597 PNTPALVKEG 626
           PNTP++V+ G
Sbjct: 119 PNTPSVVRAG 128


>U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical
           protein F55G1.9 protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 4/136 (2%)
 Frame = +3

Query: 231 TEAMKIGFIGGGRLAFALANGFISAGLAKPDEITASCHPLDVASAEAFKGIGATALFENK 410
           +E++   FIGGG +A A+  G  + G      I          SAE ++ +G   +F N 
Sbjct: 12  SESVPFVFIGGGNMAAAIIKGCQNKGFTPKSNIVIGVQ--TEKSAEKWRQLGYKNVFTNT 69

Query: 411 XXXXXXXXXXXXXXXXXXXPALKEIKDVPA-AKNKLFITVAMGVNTATVEKILP---AEA 578
                                 + +   P  ++ +  I+V  GV    +   LP      
Sbjct: 70  LEMLERYSTAIYVICVKPQVFEEVVSSWPVNSRPEFIISVMAGVPLKVLNAKLPFVSGNT 129

Query: 579 RVIRVMPNTPALVKEG 626
            ++R+MPN  + +  G
Sbjct: 130 TIVRLMPNVASSIGAG 145


>Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical
           protein F59F5.5 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 335 QLPSFRCCQC*SV*GHRCDS 394
           +LPS  CC C S  G  CDS
Sbjct: 104 RLPSVECCHCTSRHGEDCDS 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,130
Number of Sequences: 27780
Number of extensions: 236445
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)