Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G11
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   131   6e-32
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    28   1.1  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   4.5  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    25   7.9  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  131 bits (317), Expect = 6e-32
 Identities = 62/84 (73%), Positives = 68/84 (80%)
 Frame = +2

Query: 323 IIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTNAFMEALHAGADISMIGHFGVGFY 502
           I P+K    L+I DTGIGMTK DL+NNLG IAKSGT  FMEA  +GADISMIG FGVGFY
Sbjct: 67  ITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQFGVGFY 126

Query: 503 SCYLVADRVTVHSKHNDDEQYMWE 574
           S YLVAD+V V SKHNDDEQY+WE
Sbjct: 127 SAYLVADKVQVVSKHNDDEQYIWE 150



 Score =  101 bits (242), Expect = 7e-23
 Identities = 48/63 (76%), Positives = 57/63 (90%)
 Frame = +1

Query: 130 DVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKE 309
           + ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL+DP  LD+ K+
Sbjct: 3   NTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKD 62

Query: 310 LYI 318
           L+I
Sbjct: 63  LFI 65


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +2

Query: 386 ADLVNNLGTIAKSGTNAFMEALHAGADISMIGHFGVGFYSCYLV 517
           +D + N G +  +  +  M        I ++ H GV +++C+L+
Sbjct: 346 SDFLKNRGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFLM 389


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 214 FLRELISNSSDALDKIRYESL 276
           F+R+++   +D L+K+R++SL
Sbjct: 224 FIRKVVLTKADGLEKLRFQSL 244


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 169 LMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDS 300
           L+++ +++  +  E +L+ L    +D LD++  ES   PSK  S
Sbjct: 63  LLNIPMSSLQTELEKYLKPLPPAINDELDRLANESQDIPSKFKS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,304
Number of Sequences: 5004
Number of extensions: 42711
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)