Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_G11
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical pr... 144 3e-35
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 98 3e-21
U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical p... 77 9e-15
U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical p... 77 9e-15
AF143150-1|AAD37916.1| 222|Caenorhabditis elegans heat shock pr... 77 9e-15
AC024821-5|AAF60784.1| 337|Caenorhabditis elegans Hypothetical ... 29 3.1
Z72512-8|CAH04717.1| 583|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z72512-7|CAA96668.3| 568|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 27 7.2
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 27 7.2
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 27 7.2
>Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical
protein C47E8.5 protein.
Length = 702
Score = 144 bits (350), Expect = 3e-35
Identities = 68/84 (80%), Positives = 73/84 (86%)
Frame = +2
Query: 323 IIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTNAFMEALHAGADISMIGHFGVGFY 502
I PNK E TLTI+DTGIGMTKADLVNNLGTIAKSGT AFMEAL AGADISMIG FGVGFY
Sbjct: 68 ITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFY 127
Query: 503 SCYLVADRVTVHSKHNDDEQYMWE 574
S +LVAD+V V SK+NDD+ Y WE
Sbjct: 128 SAFLVADKVVVTSKNNDDDSYQWE 151
Score = 114 bits (274), Expect = 5e-26
Identities = 54/65 (83%), Positives = 63/65 (96%)
Frame = +1
Query: 124 SGDVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSG 303
S + ETFAFQAEIAQLMSLIINTFYSNKEI+LRELISN+SDALDKIRY++LT+PS+LD+G
Sbjct: 2 SENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTG 61
Query: 304 KELYI 318
KEL+I
Sbjct: 62 KELFI 66
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 98.3 bits (234), Expect = 3e-21
Identities = 47/80 (58%), Positives = 60/80 (75%), Gaps = 5/80 (6%)
Frame = +2
Query: 350 LTIIDTGIGMTKADLVNNLGTIAKSGTNAFMEALHAGADIS-----MIGHFGVGFYSCYL 514
L I DTG+GMT+ DL+NNLGTIA+SGT+ F+ L A S +IG FGVGFY+ +L
Sbjct: 133 LHITDTGVGMTRQDLINNLGTIARSGTSEFLSKLMDTATSSDQQQDLIGQFGVGFYAAFL 192
Query: 515 VADRVTVHSKHNDDEQYMWE 574
VADRV V +K+NDD+QY+WE
Sbjct: 193 VADRVVVTTKNNDDDQYIWE 212
Score = 78.6 bits (185), Expect = 3e-15
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = +1
Query: 136 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELY 315
E FQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTDP +L +E+
Sbjct: 62 EKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDPEQLRETEEMS 121
Query: 316 I 318
+
Sbjct: 122 V 122
>U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical
protein R151.7a protein.
Length = 672
Score = 77.0 bits (181), Expect = 9e-15
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +2
Query: 323 IIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTNAFMEALHAGADISMIGHFGVGFY 502
I NK++ T+T DTGIGM + DLV LGTIAKSG+ F+E A+ ++IG FGVGFY
Sbjct: 102 ITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSGSKDFIENNKENAE-AVIGQFGVGFY 160
Query: 503 SCYLVADRVTVHSK 544
S ++VAD V V ++
Sbjct: 161 SAFMVADSVVVTTR 174
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +1
Query: 148 FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 276
FQAE LM ++ + YS+ E+F+RELISN+SDAL+K RY L
Sbjct: 47 FQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL 89
>U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical
protein R151.7b protein.
Length = 479
Score = 77.0 bits (181), Expect = 9e-15
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +2
Query: 323 IIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTNAFMEALHAGADISMIGHFGVGFY 502
I NK++ T+T DTGIGM + DLV LGTIAKSG+ F+E A+ ++IG FGVGFY
Sbjct: 102 ITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSGSKDFIENNKENAE-AVIGQFGVGFY 160
Query: 503 SCYLVADRVTVHSK 544
S ++VAD V V ++
Sbjct: 161 SAFMVADSVVVTTR 174
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +1
Query: 148 FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 276
FQAE LM ++ + YS+ E+F+RELISN+SDAL+K RY L
Sbjct: 47 FQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL 89
>AF143150-1|AAD37916.1| 222|Caenorhabditis elegans heat shock
protein 75 protein.
Length = 222
Score = 77.0 bits (181), Expect = 9e-15
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +2
Query: 323 IIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTNAFMEALHAGADISMIGHFGVGFY 502
I NK++ T+T DTGIGM + DLV LGTIAKSG+ F+E A+ ++IG FGVGFY
Sbjct: 102 ITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSGSKDFIENNKENAE-AVIGQFGVGFY 160
Query: 503 SCYLVADRVTVHSK 544
S ++VAD V V ++
Sbjct: 161 SAFMVADSVVVTTR 174
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +1
Query: 148 FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 276
FQAE LM ++ + YS+ E+F+RELISN+SDAL+K RY L
Sbjct: 47 FQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL 89
>AC024821-5|AAF60784.1| 337|Caenorhabditis elegans Hypothetical
protein Y55B1AR.4 protein.
Length = 337
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 94 KMPEGMETTQSGDVETFAFQAEIAQLM 174
K G ETTQ+G + FAF AE+A+L+
Sbjct: 147 KSNSGRETTQTGCISDFAF-AEVARLL 172
>Z72512-8|CAH04717.1| 583|Caenorhabditis elegans Hypothetical
protein R07B5.8b protein.
Length = 583
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 91 IKMPEGMETTQSGDVETF----AFQAEIAQLMSLIINTFYSNKEIF 216
++ P G+E + GD+ F Q E Q + L+ F +K +F
Sbjct: 221 LRAPPGLEIYRKGDISVFEVDGRLQKEYCQTLCLVSRMFLESKTVF 266
>Z72512-7|CAA96668.3| 568|Caenorhabditis elegans Hypothetical
protein R07B5.8a protein.
Length = 568
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 91 IKMPEGMETTQSGDVETF----AFQAEIAQLMSLIINTFYSNKEIF 216
++ P G+E + GD+ F Q E Q + L+ F +K +F
Sbjct: 266 LRAPPGLEIYRKGDISVFEVDGRLQKEYCQTLCLVSRMFLESKTVF 311
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 79 LRRYIKMPEGMETTQSGDVETFAFQAEIAQLMSLIINTFYSNKE 210
L+RY P E + DVE A + QL+ ++ F ++KE
Sbjct: 682 LKRYYASPAWGEKPANDDVEDQAADEQYMQLLMVVFARFVASKE 725
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 79 LRRYIKMPEGMETTQSGDVETFAFQAEIAQLMSLIINTFYSNKE 210
L+RY P E + DVE A + QL+ ++ F ++KE
Sbjct: 682 LKRYYASPAWGEKPANDDVEDQAADEQYMQLLMVVFARFVASKE 725
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 79 LRRYIKMPEGMETTQSGDVETFAFQAEIAQLMSLIINTFYSNKE 210
L+RY P E + DVE A + QL+ ++ F ++KE
Sbjct: 682 LKRYYASPAWGEKPANDDVEDQAADEQYMQLLMVVFARFVASKE 725
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,009
Number of Sequences: 27780
Number of extensions: 247435
Number of successful extensions: 576
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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