Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G10
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    29   0.55 
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    27   2.2  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   3.8  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   5.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   6.7  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   6.7  

>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 508 RYKLQLKKNKVTTLSNFGPHSRYFARRV 425
           R  L++KK KVT+LSNF       ARR+
Sbjct: 428 RAALEIKKRKVTSLSNFKEPKLTSARRI 455


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 223 AVEFGNNVIFKDFFSKSLYLHRITFEKKIRQKILFL 330
           A+ F N VI K    +  Y H ++ EKK+  ++ FL
Sbjct: 190 AMLFMNLVILKKDGVEDAYKHLLSIEKKVLDRVAFL 225


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 412 IKIKKNNMNRTKISSFVWSKVTLIFK 335
           I I+++N+   KIS F+ +KV L+F+
Sbjct: 54  ILIQESNLEHKKISVFLVNKVPLVFQ 79


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 48  QDTMNLNYVFGCL 86
           +D +NL+YVFGC+
Sbjct: 375 RDDLNLSYVFGCI 387


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 437 EISRVWSKVTQSCDLIFLQ 493
           ++ + W K+ ++CDLIF++
Sbjct: 280 QVFKDWGKLLETCDLIFVR 298


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 48  QDTMNLNYVFGCL 86
           +D +NL+YVFGC+
Sbjct: 375 RDDLNLSYVFGCV 387


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 302 FSNVILCKYKLLEKKSLNITLLPNSTATI 216
           FSN +  + KL EK + N TLL N+  T+
Sbjct: 305 FSNFMENEKKLYEKVNTNRTLLRNANLTL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,119
Number of Sequences: 5004
Number of extensions: 40011
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)