Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G10
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchang...    29   2.0  
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL032636-1|CAA21605.1|  343|Caenorhabditis elegans Hypothetical ...    28   4.6  

>AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchangers
           protein 9 protein.
          Length = 651

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 361 WSKVTLIFKVIK-IKSFVLFFFQM*FCANTNSWKKNL*ILHYY 236
           +S++ +  K++  IK   +FFF++   +N  SW K L ILH +
Sbjct: 394 FSEMNIFIKIVTVIKVVPVFFFKLTVPSNEMSWCKPLFILHCF 436


>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 112 NVKPRVENKLYXXXXXTIKIRTKYLKKLAKLLNFNIVAVEFGN 240
           NV+ R EN+ Y        +R+  LKK   L NF++  +E  N
Sbjct: 72  NVRRRFENEKYSSTKLYFNVRSLNLKK-TSLSNFSVFTMESCN 113


>AL032636-1|CAA21605.1|  343|Caenorhabditis elegans Hypothetical
           protein Y40B1B.3 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 336 LKINVTLDHTKLDIFVRFMLFFLILIQIRYTRLAKY-LECGPKLLRVV 476
           L+I  TLD  K++ ++R   +FLIL    YTR   + + C   + RV+
Sbjct: 148 LEIIKTLDFEKIEFWIRTFDYFLILFS-NYTREVDFQIHCLRLVTRVI 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,089,782
Number of Sequences: 27780
Number of extensions: 214738
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)