Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G10
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.5  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.5  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   10.0 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   10.0 

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 349 TLIFKVIKIKSFVLFFFQM*F 287
           T+IF +I+ KSF L  F + F
Sbjct: 133 TIIFLLIRFKSFSLLNFNLLF 153


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 272 VCICTELHLKKK*DKRF 322
           VCIC +   K   DKRF
Sbjct: 78  VCICRKTSFKDLWDKRF 94


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 420 LSVSKLRKIT*IGQKYPALCGPKLR 346
           ++++ L +   IGQK+  L GP +R
Sbjct: 172 IALADLTQRAQIGQKHKLLIGPSIR 196


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 220 VAVEFGNNVIFKDFFSKSLYLHRITFEKKIRQKIL 324
           V +    +V     FS  LY+  I  E+ +RQ ++
Sbjct: 884 VTISLSASVTIACLFSPKLYIILIRPERNVRQSMM 918


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 463 NFGPHSRYFARRVYLICIKI 404
           N   H+ YF  +VY+ C+ I
Sbjct: 239 NLQRHTGYFLIQVYVPCVLI 258


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 261 FFQEFVFAQNYI*KKNKTKDFI 326
           +FQ++      + KKNK   FI
Sbjct: 17  YFQQYCLHHKILIKKNKCNAFI 38


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 160 TIKIRTKYLKKLAKLLNFNIVAVEFGNNVIFKDFFSKSLYLHRIT 294
           T+K+ T+Y+  L ++L+ N+   E  ++   ++  S  L    IT
Sbjct: 293 TLKLATRYIDFLFQVLHCNMENTEGADDASERNPRSAVLAAREIT 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,886
Number of Sequences: 438
Number of extensions: 2715
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)