Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G09
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   197   7e-52
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   197   7e-52
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.30 
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   1.2  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   1.6  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   2.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   6.4  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.4  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    25   8.4  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  197 bits (481), Expect = 7e-52
 Identities = 88/157 (56%), Positives = 117/157 (74%)
 Frame = +3

Query: 30  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMINDGLVIKKPVAVHSR 209
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++ DGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
            R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 390 HSLYMKAKGNVFKNKRVLMEYIHRKNAEKARTKMLSD 500
           H+LY++AKGN FK+KR L+E+I R  AE  RTK++ +
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQE 157


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  197 bits (481), Expect = 7e-52
 Identities = 88/157 (56%), Positives = 117/157 (74%)
 Frame = +3

Query: 30  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMINDGLVIKKPVAVHSR 209
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+I DGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
            R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 390 HSLYMKAKGNVFKNKRVLMEYIHRKNAEKARTKMLSD 500
           H+LY++AKGN FK+KR L+E+I R  AE  RTK++ +
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQE 157


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 232 SVFLRTRAREWTATGFLMTRPSLIILRMFC 143
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
 Frame = +3

Query: 90  KVWLDPNEINEIANTNSRQNIRKMINDGLVIKK-----------PVAVHSRARVRKNTEA 236
           K WLDP  ++++  T + +++++ IN   ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 237 RRKGR 251
           R+  R
Sbjct: 349 RKSLR 353


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 152 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 57
           +VLS +     +D  +  PHL   +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 272 PLTKATVTSFP-TRLCVFANTSAGMDSNWFLDDQTIIDHLTD 150
           P   A + SF  +R CV  N    +  NW+   + I  HLTD
Sbjct: 121 PFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQRHLTD 162


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 200 DSNWFLDDQTIIDHLTDVLSGISISDFIDLVWIKPHLFFTASHN 69
           D + F     +ID L+ V  G  + DFID + I  H + T   N
Sbjct: 5   DLSTFTGRSLLIDQLSSVTQGTPVLDFIDKLRI--HFYTTIRQN 46


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 42   KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMINDG 173
            +L +RLAA + RC  ++ W D          +   NI+K+I+DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 33  SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 158
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 12  GSHRARMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 125
           G  + +    K  K L +S+        W D NE+NE+
Sbjct: 9   GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,919
Number of Sequences: 5004
Number of extensions: 38143
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)