Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_G09
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 216 1e-56
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 215 2e-56
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 33 0.13
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 33 0.13
05_06_0176 + 26161529-26161957 33 0.17
07_03_1639 + 28305801-28305958,28306240-28306249 31 0.69
01_06_1453 - 37465665-37466627 31 0.69
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 30 1.2
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 29 2.1
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 2.8
03_05_0567 - 25672780-25672965,25673043-25673135,25673237-256732... 28 4.8
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 4.8
01_01_0106 + 788967-789555,790139-790162,790339-791411 28 4.8
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 27 6.4
03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268 27 6.4
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 27 8.5
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 8.5
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 27 8.5
02_05_1050 - 33757432-33757664,33757767-33758645,33758720-337591... 27 8.5
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 8.5
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 216 bits (527), Expect = 1e-56
Identities = 99/157 (63%), Positives = 118/157 (75%)
Frame = +3
Query: 30 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMINDGLVIKKPVAVHSR 209
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++ DG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
+R R+ EA++KGRH G+GKRRGT AR+P K LW AKKID+H+Y
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 390 HSLYMKAKGNVFKNKRVLMEYIHRKNAEKARTKMLSD 500
H +YMK KGN+FKNKRVLME IH+ AEKAR K LSD
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSD 157
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 215 bits (524), Expect = 2e-56
Identities = 98/157 (62%), Positives = 118/157 (75%)
Frame = +3
Query: 30 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMINDGLVIKKPVAVHSR 209
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++ DG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
+R R+ EA++KGRH G+GKRRGT AR+P K LW AKKID+H+Y
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 390 HSLYMKAKGNVFKNKRVLMEYIHRKNAEKARTKMLSD 500
H +YMK KGN+FKNKRVLME IH+ AEKAR K LSD
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSD 157
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 45 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---NDGLVIKKPVAVHSRAR 215
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 216 VRKNTEARRKGRHCGFG 266
+ T RKGR GFG
Sbjct: 806 DEETTSISRKGRAQGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 45 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---NDGLVIKKPVAVHSRAR 215
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 216 VRKNTEARRKGRHCGFG 266
+ T RKGR GFG
Sbjct: 757 DEETTSISRKGRAQGFG 773
>05_06_0176 + 26161529-26161957
Length = 142
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 33 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMINDGLVIKKPVAVHSRA 212
SSL +AAS R + + W + + N + +KM+N+G+++ P A+ R
Sbjct: 44 SSLSAPVEIAAS-RRKRRSRSWASEYNMFDQTNDDDDAVKKKMMNNGVMVAPPHAIVDRR 102
Query: 213 RVRKNTEA 236
R+R T A
Sbjct: 103 RLRGRTAA 110
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 30.7 bits (66), Expect = 0.69
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 402 MKAKGNVFKNKRVLMEYIHRKNAEKARTKMLSD 500
MK KGN+ NKR + AEKAR + LSD
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSD 33
>01_06_1453 - 37465665-37466627
Length = 320
Score = 30.7 bits (66), Expect = 0.69
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -3
Query: 299 WHSSISCTSPLTKATVTSFPTRLCVFANTSAGMDSNWFLDDQTIIDHL---TDVLSGISI 129
W S S P + AT T+ + LC A+ A + F DQ+ D L TDV S+
Sbjct: 206 WSSPASGNDPTSTAT-TATTSMLCTDASVQAALGELNFAMDQSCFDSLGLPTDVAGAGSL 264
Query: 128 SDFIDLV 108
S + +V
Sbjct: 265 SSWCSIV 271
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 114 INEIANTNSRQNIRKMINDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 287
+ E N NS + ++ GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>11_05_0010 -
18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -3
Query: 272 PLTKATVTSFPTRLCVFANTSAGMDSNWFLDDQTIIDHLTDVLSGISISDFIDLVWIKP 96
P KA ++S LC + S+W ++ IID + DVL I ID +W KP
Sbjct: 248 PNVKAVLSSI---LCQVSQLKYENFSSW--GEKEIIDKIRDVLKDIRYFIIIDDIWDKP 301
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 171 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 284
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>03_05_0567 -
25672780-25672965,25673043-25673135,25673237-25673297,
25673385-25673495,25673640-25673825,25673909-25675287,
25675393-25675776,25675813-25676061,25676147-25676386
Length = 962
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -3
Query: 167 IDHLTDVLSGISI-SDFIDLV--WIKPHLFFTASHNRGCKPLL 48
ID+LT GIS+ D +DLV W K +FF + G KP+L
Sbjct: 456 IDYLT--ADGISVLGDAVDLVILWHKNDIFFGLGTDAGEKPVL 496
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +3
Query: 30 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMINDGLVIKKPVAVHSR 209
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 210 ARVRKNTEARRK 245
NT RK
Sbjct: 162 IENSPNTVTVRK 173
>01_01_0106 + 788967-789555,790139-790162,790339-791411
Length = 561
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +3
Query: 105 PNEINEIANTNSRQNIRKMINDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 284
PNE + +N ++ K+IN G + H G HCGF +RG A
Sbjct: 135 PNENQYLDISNLKEKANKVINFG---ETAFTWHLNKITNACQGCEWNGHHCGFSSQRGQA 191
>10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = -3
Query: 269 LTKATVTSFPTRLCVFANTSAGMDSNWFLDDQTIIDHLTDVLSGISISDFIDLVWIK 99
+ +A+ L + S G+ F + I DHL + +G + I +VWI+
Sbjct: 1264 IIRASTVHDEKTLLRYVRQSPGVTEPCFSRGRVITDHLLKISNGAQRWELISMVWIE 1320
>03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268
Length = 574
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/75 (25%), Positives = 28/75 (37%)
Frame = +1
Query: 121 KSLILIPDRTXXXXXXXXXXXXNQLLSIPALVFAKTQRRVGKDVTVALVRGEVQLMLECH 300
++ ++ PDR L A QR VG TVA++ V + E H
Sbjct: 35 RAAVVHPDRAAVVHGPVRYTWAETYRRCRRLASALAQRSVGPGCTVAVIAPNVPALYEAH 94
Query: 301 KKNYGFKGKGCSVSC 345
+G G V+C
Sbjct: 95 ---FGVPMSGAVVNC 106
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -3
Query: 140 GISI-SDFIDLV--WIKPHLFFTASHNRGCKPLL 48
GIS+ D +DLV W K +FF N G KP+L
Sbjct: 462 GISVLGDAVDLVILWHKNDIFFGLGTNAGEKPVL 495
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 54 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMINDGLV 179
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>11_05_0007 -
18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 233 LCVFANTSAGMDSNWFLDDQTIIDHLTDVLSGISISDFIDLVWIKP 96
LC + S+W ++ IID + D+L I ID +W KP
Sbjct: 250 LCQVSQLKYENFSSW--GEKEIIDKIRDILKDIRYFIIIDDIWDKP 293
>02_05_1050 -
33757432-33757664,33757767-33758645,33758720-33759109,
33759488-33759613,33760497-33760557
Length = 562
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 105 PNEINEIANTNSRQNIRKMINDGLVIKKPVA-VHSRA 212
PN +++ ++ NI+ MIN ++ KPVA V+++A
Sbjct: 340 PNRTHQVNHSAGPLNIKAMINRTSLVNKPVAPVNAKA 376
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.1 bits (57), Expect = 8.5
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 84 KKKVWLDPN-EINEIANTNSRQNIRKMINDGLVIKKPVAVHSRARVRKNTEARRK 245
K KVW P E+ + +R + +K +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,755,665
Number of Sequences: 37544
Number of extensions: 269868
Number of successful extensions: 781
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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