Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G09
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   212   1e-55
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    32   0.27 
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p...    30   1.1  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   4.4  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   4.4  
AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical ...    28   4.4  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    28   4.4  
Z81537-11|CAB04377.2|  329|Caenorhabditis elegans Hypothetical p...    27   7.6  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  212 bits (518), Expect = 1e-55
 Identities = 94/157 (59%), Positives = 121/157 (77%)
 Frame = +3

Query: 30  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMINDGLVIKKPVAVHSR 209
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++NDGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
            R R+  EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 390 HSLYMKAKGNVFKNKRVLMEYIHRKNAEKARTKMLSD 500
           H LY++AKGN FKNK+ L+EYI +K  E  R K L+D
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLAD 157


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 126  ANTNSRQNIRKMINDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 260
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical protein
            C01G12.8 protein.
          Length = 1049

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 496  LSILVLAFSAFFLWMYSMRTRLFLNTLPFAFMYKE 392
            +  L L F AFF+ +Y    R F+ T P  ++YKE
Sbjct: 1013 IGFLALPF-AFFIGLYDEVRRYFIRTYPGGYIYKE 1046


>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
            protein C01G12.8 protein.
          Length = 1049

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 496  LSILVLAFSAFFLWMYSMRTRLFLNTLPFAFMYKE 392
            +  L L F AFF+ +Y    R F+ T P  ++YKE
Sbjct: 1013 IGFLALPF-AFFIGLYDEVRRYFIRTYPGGYIYKE 1046


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 420 HYPSPSCTRNGRDACLSSSLFC 355
           +YP P+CTR   D C S  LFC
Sbjct: 306 YYPRPTCTRENPD-CDSPYLFC 326


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 227  VFANTSAGMDSNWFLDDQTIIDHLTDVLSGISISD 123
            V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 1286 VLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 1320


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 482  PSLLSILPVDVLHEDTLVLEHITLRLHVQGMVEMPVYLLRCSV 354
            PSL   +P+DV +   +    + L L  + + ++ VYL RC +
Sbjct: 2243 PSLRGSVPLDVAYSSFMDNNELALALKEEELDKVAVYLSRCGL 2285


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 482  PSLLSILPVDVLHEDTLVLEHITLRLHVQGMVEMPVYLLRCSV 354
            PSL   +P+DV +   +    + L L  + + ++ VYL RC +
Sbjct: 2364 PSLRGSVPLDVAYSSFMDNNELALALKEEELDKVAVYLSRCGL 2406


>AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.8 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 338 TEHPLPLNP*FFLWHSSISCTSPLTKATVTSFPTRLCVFANTSAGMDSNWFLDDQT 171
           TE    L P    W+S  + +   T ATVTS       F++    +DS+   D  T
Sbjct: 238 TEPASTLGPVVIPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPST 293


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 227 VFANTSAGMDSNWFLDDQTIIDHLTDVLSGISISD 123
           V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 895 VLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 929


>Z81537-11|CAB04377.2|  329|Caenorhabditis elegans Hypothetical
           protein F41D3.6 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 209 AGMDSNWFLDDQTIIDHLTDVLSGISISDFIDLVWIKPHL 90
           AG DSN+ +   + IDHL  +  G+      D  W+K H+
Sbjct: 204 AGTDSNYTI---SAIDHLRSLYHGVIFIMSNDPKWVKVHI 240


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 250 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 122
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 303


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 250 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 122
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,347,287
Number of Sequences: 27780
Number of extensions: 221580
Number of successful extensions: 672
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)