Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_G07
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 146 6e-36
12_01_0323 - 2459854-2460306 146 8e-36
11_01_0317 - 2365493-2365786,2365825-2365953 110 3e-25
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168... 29 1.8
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 27 5.6
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 27 5.6
08_02_1283 - 25861355-25862755 27 7.3
05_07_0154 - 28059097-28060641 27 7.3
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 26 9.7
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 26 9.7
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 26 9.7
>01_01_0263 + 2136858-2137331
Length = 157
Score = 146 bits (354), Expect = 6e-36
Identities = 75/123 (60%), Positives = 90/123 (73%)
Frame = +1
Query: 34 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 214 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNIDRKTILD 393
+V+++ERI REK NG++V VGIHPSK V+ KLK++ DRK ILD
Sbjct: 61 -SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 394 RRA 402
R+A
Sbjct: 120 RKA 122
>12_01_0323 - 2459854-2460306
Length = 150
Score = 146 bits (353), Expect = 8e-36
Identities = 75/123 (60%), Positives = 90/123 (73%)
Frame = +1
Query: 34 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 214 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNIDRKTILD 393
+V+++ERI REK NG++V VGIHPSK V+ KLK++ DRK ILD
Sbjct: 61 -SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 394 RRA 402
R+A
Sbjct: 120 RKA 122
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 110 bits (265), Expect = 3e-25
Identities = 67/125 (53%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Frame = +1
Query: 34 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVK--SMPIRKDDEVQVV 207
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV S R+ VQV
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSYKGREGKVVQVY 60
Query: 208 RGHXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNIDRKTI 387
R +V+++ERI REK NG++V VGIHPSK V+ KLK++ DRK I
Sbjct: 61 RRR----------------WVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAI 104
Query: 388 LDRRA 402
LDR+A
Sbjct: 105 LDRKA 109
>05_01_0227 -
1684597-1684727,1685003-1685100,1685176-1685270,
1685360-1685545,1686185-1686298,1686583-1686684,
1686811-1687096,1687242-1687291,1687351-1687479,
1687590-1687724,1688163-1688165
Length = 442
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 27 RQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKT 152
+ + VQ +RD QK E + Q S S Y+++T++ VKT
Sbjct: 268 KDSTVQPSRDAKQKPGPEASIQDLASRAASRYMASTVKSVKT 309
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 343 CVIVKLKMNIDRKTILDR 396
CV K K+N+D+ ++LDR
Sbjct: 449 CVATKAKVNVDKSSLLDR 466
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 62 PEGKTGRGISVPLLTSDEYLCQH--HSPKS*DKSST*NLCQSAKTTKCRLYEDIIKASR 232
P GKTG GI V + +E CQ ++ K+ S S + K L + II A+R
Sbjct: 485 PCGKTGSGIDVDIEQREENPCQETFNAMKADGSSDLATRPCSYREVKYNLMDQIIAANR 543
>08_02_1283 - 25861355-25862755
Length = 466
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 127 APLSKELRQKFNVKSMPIRKDDEVQVVR 210
AP S ELR++ K MP +V++VR
Sbjct: 189 APRSAELRRRLRFKRMPFLVQTQVRLVR 216
>05_07_0154 - 28059097-28060641
Length = 514
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 270 SLHRKDPA*ESQWSQCVRRYP 332
+L +P+ ES W C+ RYP
Sbjct: 479 ALRNVNPSPESPWEDCIDRYP 499
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 72 KQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANP 182
K + F+CPF T T T LQ + + IYA P
Sbjct: 337 KHHDIFKCPFDKSTQT---TLLQFAEKNRKNLIYAGP 370
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 337 KGGYRRTHWLHWLSHAGSFRCR 272
K GY W+ +++ AGS+ R
Sbjct: 416 KSGYNTVEWVRYITRAGSYEIR 437
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 397 CDPGLFYGRYSSLTSQSHTLKGGYRRTHWLHWLSHAG 287
C G+ G +TS+ L+G RR H +HW H+G
Sbjct: 42 CKDGIVLGVEKLVTSKM-MLEGSNRRIHSVHW--HSG 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,998,160
Number of Sequences: 37544
Number of extensions: 216591
Number of successful extensions: 576
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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