Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G07
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   126   4e-30
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   108   2e-24
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   108   2e-24
Z92817-4|CAB07297.3|  633|Caenorhabditis elegans Hypothetical pr...    29   0.94 
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical p...    27   6.7  
AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-relat...    27   6.7  
Z81116-9|CAB03296.2|  466|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z77665-2|CAB01219.1|  131|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical p...    26   8.8  
AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl cholin...    26   8.8  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    26   8.8  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  126 bits (305), Expect = 4e-30
 Identities = 61/123 (49%), Positives = 86/123 (69%)
 Frame = +1

Query: 34  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 214 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNIDRKTILD 393
                            FV++I++I REKANG++V++GIHPSK  I KLK++ DR+ +++
Sbjct: 61  R-HKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVE 119

Query: 394 RRA 402
           R+A
Sbjct: 120 RKA 122


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  108 bits (259), Expect = 2e-24
 Identities = 53/103 (51%), Positives = 71/103 (68%)
 Frame = +1

Query: 34  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 214 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSK 342
                            FV++I++I REKANG++V++GIHPSK
Sbjct: 61  R-HKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  108 bits (259), Expect = 2e-24
 Identities = 53/103 (51%), Positives = 71/103 (68%)
 Frame = +1

Query: 34  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 214 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSK 342
                            FV++I++I REKANG++V++GIHPSK
Sbjct: 61  R-HKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z92817-4|CAB07297.3|  633|Caenorhabditis elegans Hypothetical
           protein W08G11.4 protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -1

Query: 252 HLYYFAHLLAFIMSSYNLHFVVFADWHRFHVELLS*LFGEWC*HKYSSDVRRGTEMPLPV 73
           HL+YF+ +L+   S    H +VF  W      L      + C H       +   +P P 
Sbjct: 568 HLFYFSKMLSVSASPSYTHSLVFCCW--IETILFEIKSIDNCTHTNPRKPAKSHTLPTPP 625

Query: 72  FPSGRRH 52
            P  +RH
Sbjct: 626 QPKNKRH 632


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 51  RDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANPQ 185
           RD  +KE+  +     FSH   +    T +    + QR +Y NPQ
Sbjct: 353 RDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQ 397


>Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical
           protein C54E10.3 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 88  NASSCFSFWTTSRAYCTSFC 29
           N+SSCF  WT    Y   FC
Sbjct: 113 NSSSCFIHWTWVAMYADRFC 132


>Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical
           protein Y48E1B.13a protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 379 YGRYSSLTSQSHTLKGGYRRTHWLHWLS 296
           Y R  S +S S TL G +R     HW+S
Sbjct: 173 YSRLISYSSDSLTLSGTHRSGFTYHWIS 200


>AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-related
           protein 1A protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 379 YGRYSSLTSQSHTLKGGYRRTHWLHWLS 296
           Y R  S +S S TL G +R     HW+S
Sbjct: 173 YSRLISYSSDSLTLSGTHRSGFTYHWIS 200


>Z81116-9|CAB03296.2|  466|Caenorhabditis elegans Hypothetical
           protein T06C12.10 protein.
          Length = 466

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 255 VHLYYFAHLLAFIMSSYNLHFVVFAD 178
           V + Y  H++AF  S Y LH  V  D
Sbjct: 78  VSVLYLVHIIAFFYSIYRLHHKVEPD 103


>Z77665-2|CAB01219.1|  131|Caenorhabditis elegans Hypothetical
           protein K02E11.3 protein.
          Length = 131

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 65  EGKTGRGISVPLLTSDEYLCQHHSPKS*DKSST*NLCQSAKTTKCRLYEDI 217
           EG TG  I +P+  S  Y  + H+PK         +C     T C  +ED+
Sbjct: 32  EGDTGT-IGLPV--SANYRREVHNPKGTMDEQLYRVCNGKNKTTCGFWEDV 79


>Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 231 LLAFIMSSYNLHFVVFADWHRFHVE 157
           ++AF++ ++ ++F+ F  WH+  VE
Sbjct: 521 VVAFLIITFGINFIGFIHWHQAGVE 545


>Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 231 LLAFIMSSYNLHFVVFADWHRFHVE 157
           ++AF++ ++ ++F+ F  WH+  VE
Sbjct: 521 VVAFLIITFGINFIGFIHWHQAGVE 545


>AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl choline
           receptor alpha subunitDES-2 protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 231 LLAFIMSSYNLHFVVFADWHRFHVE 157
           ++AF++ ++ ++F+ F  WH+  VE
Sbjct: 521 VVAFLIITFGINFIGFIHWHQAGVE 545


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   TRVVYVKKRQNEVQ*ARDVVQKEKQEEAFQCPFSHPTS 116
           T V   ++  ++ Q   D  Q+++Q++A+Q P + PTS
Sbjct: 346 TPVQQYQQSYSQAQPPVDYYQQQQQQQAYQPPVNPPTS 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,898
Number of Sequences: 27780
Number of extensions: 185965
Number of successful extensions: 557
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)