Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G06
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    30   0.19 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   1.8  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   4.2  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   4.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   5.5  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    25   7.3  

>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +3

Query: 330 INS*HLIGLIVNYV*NFAVILKVKCKPSFEMLKVIRFDKIIN 455
           +NS H IG I  YV    ++  +  K SFEM+K++R DKI+N
Sbjct: 70  LNSKHSIG-IHGYV----LVYSITSKSSFEMVKIVR-DKILN 105


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 160 LGYLYVVIMAPILIPVLQVRYSSFYVXXXXXXXXXXFNSVFNS 288
           +GYL+ ++ AP  I VL +     +           FNS+F+S
Sbjct: 120 VGYLFKIVRAPFYIYVLLILSKRLHSIFILRLFNDGFNSLFSS 162


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 183 YGTHIDPGTPGTLFFVL--CLNPINQRVVEF*QCFQLKWQ*TINTWL 317
           +    D G+ GTLF +L  C+ P  +R+     C  L+    IN  L
Sbjct: 679 FSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTAINARL 725


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 438 FDKIINALNYFVPSSNKFLIIYSEEYYGDVDL 533
           FD+ +   N  + +S   L  YSEE  GD+ L
Sbjct: 624 FDEGVGVYNPRIQTSEDLLQTYSEEQMGDIGL 655


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 192 HIDPGTPGTLFFVLCLNPINQ 254
           H DP     L F  C+NP+NQ
Sbjct: 285 HPDPARLNFLSFSFCVNPMNQ 305


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 171 VRRDYGTHIDPGTPGTLFF 227
           VRRD+   I PG P TL+F
Sbjct: 180 VRRDWLDSIKPGQPETLWF 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,535
Number of Sequences: 5004
Number of extensions: 32468
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)