Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G06
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-13|CAI58636.1|  206|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b prot...    28   5.0  
AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical...    27   6.7  
AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z93383-13|CAI58636.1|  206|Caenorhabditis elegans Hypothetical
           protein F54B8.7b protein.
          Length = 206

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 23  CTNLHCFINNFYFHYYVSYYDCIHFL 100
           C +  C +N+ Y++YY++    +HF+
Sbjct: 80  CDDFKCTVNSCYYNYYLTQEQIVHFV 105


>Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.7a protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 23  CTNLHCFINNFYFHYYVSYYDCIHFL 100
           C +  C +N+ Y++YY++    +HF+
Sbjct: 157 CDDFKCTVNSCYYNYYLTQEQIVHFV 182


>Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.9 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 23  CTNLHCFINNFYFHYYVSYYDCIHFLTTS*IYNIILALLVFNF 151
           C N  C +N  Y  Y+V++   +++L  S    +   L V+++
Sbjct: 157 CDNFQCSVNQCYQDYWVNHEQVLYYLIGSSSVILFFRLFVWSY 199


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  CTNLHCFINNFYFHYYVSYYDCIHF 97
           C    C +N+ Y++YY++    +HF
Sbjct: 157 CDVFKCTVNSCYYNYYLTQEQIVHF 181


>AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b protein
           protein 49 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 447 IINALNY-FVPSSNKFLIIYSEEYYGDVDL 533
           I+  ++Y F P   KFL+IY++   G +D+
Sbjct: 519 ILKGIHYEFAPIDRKFLMIYNQSEVGGIDI 548


>AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical
           protein F33D11.10 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 180 DYGTHIDPGTPGTLFFVLCLNPINQRVVE 266
           DYG H+  GTPG +F ++    +  R ++
Sbjct: 142 DYGQHVVSGTPGRVFDMIRRRNLRTRAIK 170


>AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical
           protein Y65B4A.6 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 180 DYGTHIDPGTPGTLFFVLCLNPINQRVVE 266
           DYG H+  GTPG +F ++    +  R ++
Sbjct: 142 DYGQHVVSGTPGRVFDMIRRRNLRTRAIK 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,131,563
Number of Sequences: 27780
Number of extensions: 183206
Number of successful extensions: 347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)