Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G05
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   251   3e-67
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   162   1e-40
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   5.9  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  251 bits (614), Expect = 3e-67
 Identities = 114/156 (73%), Positives = 133/156 (85%)
 Frame = +2

Query: 41  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 220
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 221 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAP 400
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+YKGLDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 401 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 508
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK 161


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  162 bits (394), Expect = 1e-40
 Identities = 89/156 (57%), Positives = 103/156 (66%)
 Frame = +2

Query: 41  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 220
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 221 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAP 400
                                    + L     NAE    YKGLDVD LVI+HI V RA 
Sbjct: 66  ------------------------LDLLKNAESNAE----YKGLDVDHLVIEHINVQRAA 97

Query: 401 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 508
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK 133


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 308 GAGILQISWANDPVWYQTV*LVH 240
           GAG+ +I W N+  W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +2

Query: 278 WPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 439
           W K+    +  LL  AE++      D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 440 NPYMSSPCHIEVCLSER 490
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 167 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 346
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 347 GLD 355
           G +
Sbjct: 554 GYE 556


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 167 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 346
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 347 GLD 355
           G +
Sbjct: 554 GYE 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,277
Number of Sequences: 27780
Number of extensions: 252853
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)