Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_G03
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0312 + 2764744-2767390,2767632-2767990 31 0.79
11_02_0037 - 7613632-7613727,7614452-7615507 30 1.8
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 29 3.2
08_02_1557 + 27867977-27869134 29 3.2
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883... 29 3.2
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 27 9.7
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 27 9.7
03_05_0128 - 21076504-21076974,21077075-21077311,21077558-210776... 27 9.7
02_04_0510 + 23558111-23559613 27 9.7
01_06_0579 + 30379243-30379617 27 9.7
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 31.1 bits (67), Expect = 0.79
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 649 STAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGV-ISNNRLIGRSGEIPPN 473
S +G+ P A L Q W SLA +P++ L + +S N L SG IPP
Sbjct: 332 SLSGTIPAAIGALPSLEVLQLWNNSLAGRLPESLGASRRLVRLDVSTNSL---SGPIPPG 388
Query: 472 TCSQAGGRAA 443
C AG R A
Sbjct: 389 VC--AGNRLA 396
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 315 PYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTPE-HSHHQMHAALPP 458
P+ + G + +G AY+ AR+ P P H HH H + P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 476 RRNLPTSANQSIIRYHTIQTSVHPRGVRNR 565
+ NL + +S++RYH + TS G+R R
Sbjct: 196 KSNLNCTIKESLVRYHDVVTSAKKHGIRIR 225
>08_02_1557 + 27867977-27869134
Length = 385
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 628 VRASAAYPLARSQAWCKSLAASVP 557
V AS+AYP Q+ CKS AAS P
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSP 241
>07_03_1251 +
25186333-25188027,25188113-25188208,25188292-25188381,
25188473-25188577,25188764-25188823,25188931-25188993,
25189077-25189172,25189982-25190146,25191104-25191277,
25191387-25191452,25191556-25191654,25192714-25192857,
25193312-25193401
Length = 980
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 643 AGSSPVRASAAYPLARSQA--WCKSLAASVPDTAWMHACLNGVISN 512
A SP A+AA P R++A +C P ++ +H CL G+ S+
Sbjct: 11 ASDSPA-AAAASPAVRAEALAYCARARDETPPSSLLHLCLYGLASS 55
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 12 NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAAHGFPVIEKDVFAFKQTNG 185
N +L + G P + + G++ + G VTL+ AHG + DV +F G
Sbjct: 697 NTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGAHGRTISSVDVASFGVARG 756
Query: 186 RIG 194
R G
Sbjct: 757 RCG 759
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 513 LDITPFRQACIHAVSGTDAAKDL 581
LDIT RQ +H VSGTD KD+
Sbjct: 168 LDIT--RQFLLHIVSGTDVEKDV 188
>03_05_0128 -
21076504-21076974,21077075-21077311,21077558-21077682,
21082636-21082885
Length = 360
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 643 AGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNRLIG-RSGEIPPNTC 467
AG++ + A++ + A SLAA+VP + L V +NN L+ + P N
Sbjct: 3 AGNNAIAAASFAIVVLVAAAASSLAAAVPAVYVLGDSLADVGNNNHLLTLLKADFPHNGI 62
Query: 466 SQAGGRA 446
GG+A
Sbjct: 63 DYPGGKA 69
>02_04_0510 + 23558111-23559613
Length = 500
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 309 CYHRREDHVVCLGRNHSLRSSKPQV*KYRRPLIRI 205
CY+ R+D + + + +S KP + Y RPL+R+
Sbjct: 371 CYYGRDDDALNVLKEMEAQSCKPDIQSY-RPLLRL 404
>01_06_0579 + 30379243-30379617
Length = 124
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 436 RCTLLCHQPVNRCSEESPH 492
RCT+ CH P+ R S SPH
Sbjct: 10 RCTISCHSPMRRSS--SPH 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,688,820
Number of Sequences: 37544
Number of extensions: 448281
Number of successful extensions: 1386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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