Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G03
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    29   3.8  
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      29   3.8  
Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    28   6.6  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine re...    27   8.7  

>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 288  GLLGDGNNEPYDDFRLPNGKI 350
            GLLG  NN+P DD   P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 111 PVHCL*AQ*WFRSCPP 64
           P HCL  Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 111 PVHCL*AQ*WFRSCPP 64
           P HCL  Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149


>Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical
           protein F16H6.1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 36  QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTN 182
           Q+G PK+ + +D+SG      D G+   NG A GFP++E     +  TN
Sbjct: 98  QSGSPKSCLWDDQSG------DAGK--YNGFAPGFPLLEIGSCVYVPTN 138


>Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical
           protein F49C5.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 138 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 278
           FP+     + F  TN  IG      L +F     E C++  N  YLG
Sbjct: 125 FPLWHMKKYRFNPTNFGIGFSLLIALFSFAVLLPEGCHYLFNRDYLG 171


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 211 PYLEPRPIRPLVCLNANTSFSMT 143
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 211 PYLEPRPIRPLVCLNANTSFSMT 143
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 49   GCPFCSCRSTVKFL 8
            GCP C CRS  +FL
Sbjct: 1230 GCPICDCRSPCEFL 1243


>AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine
           receptor, class x protein122 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 138 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 278
           FP+     + F  TN  IG+     + +F     E C++  N  YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAVFSFAVLLPEGCHYLFNRDYLG 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,119
Number of Sequences: 27780
Number of extensions: 349862
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)