Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_G03
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.16 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 195 LGSKYGLMAFCTSKLEVCYFEVNGFYLGKLRG-LLGDGNNEPYDDFRLPNGKICTSESEF 371
           +   +G     T+K +  YF+  G   GK RG ++ + NN+ +   +  +     +ESEF
Sbjct: 1   MADDWGKTVSYTNKKDESYFDEGGRSYGKGRGFIIQNNNNDDWSVGKKNSNSGTINESEF 60

Query: 372 GN 377
            +
Sbjct: 61  ND 62


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 517 ISHHSDKRASTRCPEQTPLRTCTRPVTWREDTRRWP 624
           +S H    A  RC   T  +     +TW +D R+ P
Sbjct: 340 LSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQLP 375



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 413  DSRALPPPDARCSA 454
            D  ++PP D RC+A
Sbjct: 1109 DVPSIPPEDVRCAA 1122


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 517 ISHHSDKRASTRCPEQTPLRTCTRPVTWREDTRRWP 624
           +S H    A  RC   T  +     +TW +D R+ P
Sbjct: 340 LSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQLP 375



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 413  DSRALPPPDARCSA 454
            D  ++PP D RC+A
Sbjct: 1105 DVPSIPPEDVRCAA 1118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 381 YSLARSCPKVQTPEHSHHQMHAALPPACEQVFGGISPL--RPI 503
           YS  RS   +     +HH+++ A   +C+ V G +  +  RP+
Sbjct: 54  YSGTRSSESLTA--QAHHRLYPAFSSSCDPVPGNLEQIGSRPL 94


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 270  YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 389
            Y   +RGL G+ +++  +DF  P   +      F  +Y+L
Sbjct: 1590 YRYSVRGLCGNFDHDSTNDFVGPKNCLFRKPEHFVASYAL 1629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,207
Number of Sequences: 438
Number of extensions: 4332
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)