Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_G02
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 48 7e-07
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 44 1e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 37 0.001
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 33 0.020
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.081
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 0.57
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 27 0.75
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 2.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 4.0
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 5.3
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 24 9.3
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 24 9.3
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 24 9.3
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 24 9.3
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 24 9.3
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 24 9.3
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 47.6 bits (108), Expect = 7e-07
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 133 CPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTN---CSEHEGELFCKVC 288
C KC +SV + + GG WH CFKC C K LD ++ + + ++FCK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 43.6 bits (98), Expect = 1e-05
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 97 STMP--FKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGE 270
ST P ++ C CG S+ A A G K H CFKC C + L+ EG+
Sbjct: 244 STKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK 303
Query: 271 LFCKVCHARTF 303
+C + + F
Sbjct: 304 FYCHLDYHEQF 314
Score = 37.5 bits (83), Expect = 7e-04
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 130 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHA 294
KC KC K + + + G ++H C+ CG C LL E C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 133 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGMCQKLLDSTN---CSEHEGELFCKVC 288
C +CG++ E ++ GG WHK CF C C K L+ ++ +G C C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 34.3 bits (75), Expect = 0.007
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +1
Query: 127 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVC 288
P C C + A R+ +G +H+ CF+C C+K + +N +FC C
Sbjct: 69 PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 32.7 bits (71), Expect = 0.020
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 133 CPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSE--HEGELFCKVCHART 300
C CG A ++ ++ W K C CG+ + + CSE G C+ CH T
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCHTDT 158
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 30.7 bits (66), Expect = 0.081
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 100 TMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFC 279
T+P P+C CG++ + A E G + C+ C Q ++ C+E + E C
Sbjct: 8 TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60
Query: 280 KVC 288
C
Sbjct: 61 YAC 63
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 0.57
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 110 SNQQTTRSARNAGNQFTRPRSELPVGSNGTKCASNAVCARSYWIRPTAQNT 262
+N +T + N+G F +P + GSN T S+++ + +P A NT
Sbjct: 213 TNNASTSTTANSGFSFGKPATTSAPGSNTTVTPSSSITGTND-SKPAASNT 262
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 27.5 bits (58), Expect = 0.75
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 287 HTLQNSSPSCSEQLVESNNFWHIPHLKHIL 198
HT + PSCS Q IPH K ++
Sbjct: 253 HTFHATCPSCSHQCDTHMKLLDIPHFKEVI 282
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 242 ESNNFWHIPHLKHILCHLSPP 180
E++N++ P L+H LCH +PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 4.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 151 SVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCS 255
SVY A+++ L+WH G+ L ST S
Sbjct: 189 SVYEAQQKRPFSLRWHTSLLSTGVALGLALSTKLS 223
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 227 WHIPHLKHILCHLSPPATRSSAA*TDFPH 141
W +P + H+LCH R+SA F H
Sbjct: 5 WKLP-VNHLLCHSFKSIPRTSAYAVRFAH 32
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +1
Query: 103 MPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKC 216
+PF P N KC C + ++ G H C+ C
Sbjct: 246 LPFIPEGNRKCSLCMEFIHCPAATECG----HIFCWSC 279
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 23.8 bits (49), Expect = 9.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 230 FWHIPHLKHILCHLSPPATRSSAA*TDFPHFGHFGLSAG 114
F IP I+ +S P+TR + A + FG FG G
Sbjct: 13 FLLIPTALLIIGSVSVPSTRMTLAKVEGTEFGIFGTCTG 51
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 115 PADNPKCPKCGKSVYAAEERVAGGLK-WHKMCFKC 216
P +N C KCG + + E++ K H C C
Sbjct: 141 PHNNIACAKCGNELVSDEKKSIFAAKCGHLFCSTC 175
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 23.8 bits (49), Expect = 9.3
Identities = 17/70 (24%), Positives = 28/70 (40%)
Frame = -1
Query: 264 FVF*AVGRIQ*LLAHTAFEAHFVPFEPTGNSLLGRVN*FPAFRALRVVCWFERHCARLTY 85
FV V R+ L F+ H+ T + G P F L++ C+F +H +
Sbjct: 272 FVGKCVNRVTPYLERFWFKCHYGSKLGTALQVAG-----PGFDVLQMFCYFSQHVSEWGI 326
Query: 84 PVRRVATRVE 55
P+ +E
Sbjct: 327 PLESAPDALE 336
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 154 VYAAEERVAGGLKWHKMCFKCGMCQKLLDST 246
VY+ E +WH M FK G LL T
Sbjct: 320 VYSMEFPRVAHFRWHYMAFKAGSTFGLLALT 350
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 23.8 bits (49), Expect = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 97 STMPFKPADNPKCPKCGKSVY 159
S +P + PKCPK G ++Y
Sbjct: 128 SYLPNQVIRRPKCPKPGSTLY 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,150
Number of Sequences: 5004
Number of extensions: 29067
Number of successful extensions: 90
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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