Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F23
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 66 2e-11
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 66 2e-11
07_03_0078 - 13147741-13148913 32 0.23
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 1.2
11_02_0038 - 7631462-7634428,7635975-7636250 27 5.0
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 27 5.0
07_03_0079 + 13169773-13170861 27 6.6
08_02_0415 + 16898549-16898644,16899406-16899678,16899916-168999... 27 8.7
05_01_0113 + 760584-760861,760964-761021,761229-761306 27 8.7
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +3
Query: 189 KLLGTHSMKKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 347
++ G +KR ELLKV KDKRALK KR+LGTH RAK+KREE++ VL +MR
Sbjct: 49 EVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +2
Query: 29 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 208
P+ + +G+ KGH TK + + RP+ KG TK FVR+L+REV G A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 209 YEE 217
YE+
Sbjct: 56 YEK 58
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +3
Query: 189 KLLGTHSMKKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 347
+++G +KR ELLKV KDKRALK KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 49 EVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
Score = 43.6 bits (98), Expect = 7e-05
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +2
Query: 29 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 208
P+ + +G+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 209 YEE 217
YE+
Sbjct: 56 YEK 58
>07_03_0078 - 13147741-13148913
Length = 390
Score = 31.9 bits (69), Expect = 0.23
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 132 AGLILMALSVIPFLPADIFVVLWPF 58
AGL+ AL VIP LP + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 341 DEEGGRTPSPPRHHSH 388
DEE TPSPP HH H
Sbjct: 83 DEEEEATPSPPPHHQH 98
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 249 DKRALKFLKRRLGTHIRAKRKREELSNV 332
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 336 LVRC*ALHASSSR--GCVCRGDAS 271
L RC LH+ SS GC+C GD++
Sbjct: 527 LKRCVGLHSGSSVVVGCICNGDSN 550
>07_03_0079 + 13169773-13170861
Length = 362
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 132 AGLILMALSVIPFLPADIFVVLWP 61
AGL+ AL IP LP+ + +V WP
Sbjct: 44 AGLLYFALVGIPALPSILRLVAWP 67
>08_02_0415 +
16898549-16898644,16899406-16899678,16899916-16899996,
16900094-16900369,16900414-16900932
Length = 414
Score = 26.6 bits (56), Expect = 8.7
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +2
Query: 56 RKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEEEGNGIA 235
RK TTK SAG + K P L+G + K V R+ A+Y+ + + +A
Sbjct: 254 RKPENTTKDSAGGSSFISEENKENPPLLEGNKKKAPLLVEG-KRKRPKVAKYDCKAH-MA 311
Query: 236 QSIER*ARP*VLEASPRHTHP 298
+ R + V+ P+HTHP
Sbjct: 312 VGL-RDNKWRVIAFQPKHTHP 331
>05_01_0113 + 760584-760861,760964-761021,761229-761306
Length = 137
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 56 RKGHKTTKISAGKKGITDKAIKIRPARL 139
RKGHK +ISA K+ T + +K P L
Sbjct: 81 RKGHKCDRISAEKRANTVELMKKMPQML 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,842
Number of Sequences: 37544
Number of extensions: 201456
Number of successful extensions: 608
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -