Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F23
(434 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 81 1e-15
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 81 1e-15
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 81 1e-15
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 81 1e-15
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 81 1e-15
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 64 3e-10
BC125162-1|AAI25163.1| 544|Homo sapiens NBPF4 protein protein. 35 0.14
BC043522-1|AAH43522.1| 410|Homo sapiens NBPF5 protein protein. 35 0.14
AL392088-1|CAI23469.1| 649|Homo sapiens novel protein similar t... 35 0.14
AL390038-2|CAH70399.1| 649|Homo sapiens novel protein similar t... 35 0.14
AL359258-3|CAI14514.1| 638|Homo sapiens novel protein protein. 35 0.14
BC125161-1|AAI25162.1| 573|Homo sapiens NBPF4 protein protein. 29 9.1
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = +3
Query: 189 KLLGTHSMKKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 347
++ G ++RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVL MR
Sbjct: 46 EVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98
Score = 56.0 bits (129), Expect = 5e-08
Identities = 31/64 (48%), Positives = 39/64 (60%)
Frame = +2
Query: 23 MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 202
MA R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 203 AQYE 214
A YE
Sbjct: 51 APYE 54
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = +3
Query: 189 KLLGTHSMKKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 347
++ G ++RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVL MR
Sbjct: 46 EVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98
Score = 56.0 bits (129), Expect = 5e-08
Identities = 31/64 (48%), Positives = 39/64 (60%)
Frame = +2
Query: 23 MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 202
MA R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 203 AQYE 214
A YE
Sbjct: 51 APYE 54
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = +3
Query: 189 KLLGTHSMKKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 347
++ G ++RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVL MR
Sbjct: 46 EVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98
Score = 56.0 bits (129), Expect = 5e-08
Identities = 31/64 (48%), Positives = 39/64 (60%)
Frame = +2
Query: 23 MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 202
MA R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 203 AQYE 214
A YE
Sbjct: 51 APYE 54
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = +3
Query: 189 KLLGTHSMKKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 347
++ G ++RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVL MR
Sbjct: 46 EVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98
Score = 56.0 bits (129), Expect = 5e-08
Identities = 31/64 (48%), Positives = 39/64 (60%)
Frame = +2
Query: 23 MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 202
MA R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 203 AQYE 214
A YE
Sbjct: 51 APYE 54
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = +3
Query: 189 KLLGTHSMKKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 347
++ G ++RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVL MR
Sbjct: 46 EVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98
Score = 56.0 bits (129), Expect = 5e-08
Identities = 31/64 (48%), Positives = 39/64 (60%)
Frame = +2
Query: 23 MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGH 202
MA R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 203 AQYE 214
A YE
Sbjct: 51 APYE 54
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 63.7 bits (148), Expect = 3e-10
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +3
Query: 234 LKVSKDKRALKFLKRRLGTHIRAKRKREELSN 329
LKVSKDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32
>BC125162-1|AAI25163.1| 544|Homo sapiens NBPF4 protein protein.
Length = 544
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 269 LEASPRHTHPREEEA*RAQQRTNTD--EEGGRTPSPPRHH 382
L H H EEEA D EE G+ P PPRHH
Sbjct: 242 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 281
>BC043522-1|AAH43522.1| 410|Homo sapiens NBPF5 protein protein.
Length = 410
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 269 LEASPRHTHPREEEA*RAQQRTNTD--EEGGRTPSPPRHH 382
L H H EEEA D EE G+ P PPRHH
Sbjct: 301 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 340
>AL392088-1|CAI23469.1| 649|Homo sapiens novel protein similar to
FLJ32883 containing DUF1220 domains protein.
Length = 649
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 269 LEASPRHTHPREEEA*RAQQRTNTD--EEGGRTPSPPRHH 382
L H H EEEA D EE G+ P PPRHH
Sbjct: 253 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 292
>AL390038-2|CAH70399.1| 649|Homo sapiens novel protein similar to
FLJ32883 containing DUF1220 domains protein.
Length = 649
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 269 LEASPRHTHPREEEA*RAQQRTNTD--EEGGRTPSPPRHH 382
L H H EEEA D EE G+ P PPRHH
Sbjct: 253 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 292
>AL359258-3|CAI14514.1| 638|Homo sapiens novel protein protein.
Length = 638
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 269 LEASPRHTHPREEEA*RAQQRTNTD--EEGGRTPSPPRHH 382
L H H EEEA D EE G+ P PPRHH
Sbjct: 242 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 281
>BC125161-1|AAI25162.1| 573|Homo sapiens NBPF4 protein protein.
Length = 573
Score = 28.7 bits (61), Expect = 9.1
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +2
Query: 269 LEASPRHTHPREEEA*RAQQRTNTD--EEGGRTPSPPRH 379
L H H EEEA D EE G+ P PPR+
Sbjct: 242 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRN 280
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,885,861
Number of Sequences: 237096
Number of extensions: 1036243
Number of successful extensions: 6680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6675
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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