Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F23
(434 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 69 2e-12
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical pr... 29 1.1
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein. 29 1.1
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein. 29 1.1
Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical p... 29 1.5
AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical ... 29 1.5
Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical pr... 28 2.5
U58762-5|AAK39304.2| 496|Caenorhabditis elegans Hypothetical pr... 28 2.5
AJ431373-1|CAD24083.1| 496|Caenorhabditis elegans putative alph... 28 2.5
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 27 5.9
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 27 5.9
Z81117-12|CAB03320.2| 345|Caenorhabditis elegans Hypothetical p... 27 7.8
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 68.5 bits (160), Expect = 2e-12
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +3
Query: 189 KLLGTHSMKKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 347
++ G ++R +E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+ R
Sbjct: 48 EITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 100
Score = 44.4 bits (100), Expect = 4e-05
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +2
Query: 41 IAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYE 214
+A+GL KGH T++ +K R R KG+ +K +K VR+LVRE+ G A YE
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYE 56
>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
protein C34B4.1b protein.
Length = 1099
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 147 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 43
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724
>Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical
protein C34B4.1a protein.
Length = 995
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 147 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 43
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 587 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 620
>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
Length = 1045
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 147 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 43
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 637 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 670
>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
Length = 1099
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 147 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 43
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724
>Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 332 YVAELFTLPLRADVCAEATLQELKGALIFR 243
Y+ LFTLPL A C + +QE + A+IFR
Sbjct: 35 YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63
>AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 332 YVAELFTLPLRADVCAEATLQELKGALIFR 243
Y+ LFTLPL A C + +QE + A+IFR
Sbjct: 35 YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63
>Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical
protein T28D6.7 protein.
Length = 322
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 9 VNPKSWLPDLKSQLVCEKATKRQRYPLAKRVLQTKPLKLGQL 134
V +SWL K +L+C + + YP AK ++ L G L
Sbjct: 168 VMQRSWLETDKDRLICSHSVCHEDYPPAKGCIRATVLISGYL 209
>U58762-5|AAK39304.2| 496|Caenorhabditis elegans Hypothetical
protein T27F7.3a protein.
Length = 496
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -2
Query: 328 LLSSSRFLFARMCVPRRRFKNLRARLSFDTLSNSIALFFILCVPNNFTNQIADKLRVFGL 149
L + + F F ++C+ + K + A SF T +S +F+ C P +N + L + L
Sbjct: 94 LFALADFSFYKICLRLCKTKGI-AENSFVTYLSSWFVFY--CAPRTLSNSLETSLTLIAL 150
Query: 148 NAL*PSWPNFNG 113
N NF G
Sbjct: 151 NWFPFETKNFKG 162
>AJ431373-1|CAD24083.1| 496|Caenorhabditis elegans putative alpha 2
mannosyltransferaseprotein.
Length = 496
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -2
Query: 328 LLSSSRFLFARMCVPRRRFKNLRARLSFDTLSNSIALFFILCVPNNFTNQIADKLRVFGL 149
L + + F F ++C+ + K + A SF T +S +F+ C P +N + L + L
Sbjct: 94 LFALADFSFYKICLRLCKTKGI-AENSFVTYLSSWFVFY--CAPRTLSNSLETSLTLIAL 150
Query: 148 NAL*PSWPNFNG 113
N NF G
Sbjct: 151 NWFPFETKNFKG 162
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 11 QSEIMAPRFEIAIGLRK----GHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRD 178
++E++A R ++ LR+ H+ +++ K + K +I T+ KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185
Query: 179 LVREVVGHAQYE 214
+ RE G +YE
Sbjct: 1186 IEREYKGIPEYE 1197
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 11 QSEIMAPRFEIAIGLRK----GHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRD 178
++E++A R ++ LR+ H+ +++ K + K +I T+ KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185
Query: 179 LVREVVGHAQYE 214
+ RE G +YE
Sbjct: 1186 IEREYKGIPEYE 1197
>Z81117-12|CAB03320.2| 345|Caenorhabditis elegans Hypothetical
protein T06E6.5 protein.
Length = 345
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 169 KLRVFGLNAL*PSWPNFNGFVCNTLFASGYLCRFVAFSQ 53
KL V GL +L W + + N F + +C FV FS+
Sbjct: 198 KLDVTGLTSL-TQWRKAHTVIMNDFFITADICDFVNFSE 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,690,122
Number of Sequences: 27780
Number of extensions: 167684
Number of successful extensions: 535
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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