Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F22
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 120 9e-29
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 93 2e-20
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 79 3e-16
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 45 6e-06
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 42 5e-05
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 38 9e-04
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 35 0.006
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 34 0.011
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 33 0.025
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 31 0.075
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 31 0.099
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 31 0.099
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 30 0.13
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.17
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 29 0.30
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.40
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 0.70
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 0.70
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 0.92
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 27 1.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 1.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 1.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 1.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.2
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 1.6
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 27 1.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 1.6
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 1.6
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 26 2.1
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 2.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 2.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 2.8
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |... 26 2.8
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 3.7
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 25 3.7
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 25 3.7
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 25 3.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 3.7
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 25 3.7
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 25 3.7
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 25 4.9
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 4.9
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 4.9
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 6.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.5
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 25 6.5
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 25 6.5
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 6.5
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 6.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 6.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 24 8.6
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 24 8.6
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 24 8.6
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 24 8.6
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 24 8.6
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 120 bits (289), Expect = 9e-29
Identities = 51/77 (66%), Positives = 65/77 (84%)
Frame = +1
Query: 196 LPWIEKYRPQTFDDIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLARALLG 375
LPW+EKYRP DDIVGNE+T+ RL V AK GN P+++I+G PG+GKTT+ILCLA ALLG
Sbjct: 21 LPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLG 80
Query: 376 ASFKDAVLELNASNDRG 426
++K+ VLELNAS++RG
Sbjct: 81 PAYKEGVLELNASDERG 97
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 93.1 bits (221), Expect = 2e-20
Identities = 39/100 (39%), Positives = 65/100 (65%)
Frame = +1
Query: 127 MEVDEAESKPAKPVAGPSKPTTNLPWIEKYRPQTFDDIVGNEDTVSRLSVFAKNGNAPNI 306
M +++ + + A + P + LPW+EKYRP +D+V ++D +S L F + P++
Sbjct: 1 MSIEKGKGR-AMDIDLPLGSESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHM 59
Query: 307 IIAGPPGVGKTTTILCLARALLGASFKDAVLELNASNDRG 426
+ GPPG GKT+TIL AR + G ++++ ++ELNAS+DRG
Sbjct: 60 LFYGPPGTGKTSTILACARKIYGPNYRNQLMELNASDDRG 99
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 79.0 bits (186), Expect = 3e-16
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 193 NLPWIEKYRPQTFDDIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLARALL 372
++PW+E YRP+T D + E TV L + N P+++ G PG GKT+TIL L+R L
Sbjct: 18 SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELF 77
Query: 373 GAS-FKDAVLELNASNDRG 426
G K VLELNAS++RG
Sbjct: 78 GPQLMKSRVLELNASDERG 96
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 44.8 bits (101), Expect = 6e-06
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +1
Query: 202 WIEKYRPQTFDDIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLARALLG 375
W+++YRP+T + ++ RL + P++++ GP G GK T ++ + R L G
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 41.5 bits (93), Expect = 5e-05
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Frame = +1
Query: 202 WIEKYRPQTFDDIVGNEDTVSRLSVFAK--------NGNAPN---------IIIAGPPGV 330
W KY P + DI GN+ V +L + + N N P ++++GPPG+
Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420
Query: 331 GKTTTILCLARALLGASFKDAVLELNASNDR 423
GKTT +A+ L G VLELNAS+ R
Sbjct: 421 GKTTAAHLVAK-LEGYD----VLELNASDTR 446
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 37.5 bits (83), Expect = 9e-04
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 202 WIEKYRPQTFDDIVGNEDTVSRLSVFAKNGNAPN--IIIAGPPGVGKTTTILCLARAL 369
W EKY PQ D+ ++ +S + + + + ++I GP G GK+T + LA+ L
Sbjct: 72 WFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKEL 129
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 34.7 bits (76), Expect = 0.006
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 208 EKYRPQTFDDIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLARALL 372
E R D ++G ED + R N ++ G PGVGKT+ LAR ++
Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRII 227
Score = 24.2 bits (50), Expect = 8.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 241 VGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLA 360
V N +SR + N + + GP G GKT LA
Sbjct: 596 VANAIRLSRAGLSDPNQPIASFLFCGPSGTGKTLLTKALA 635
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 33.9 bits (74), Expect = 0.011
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 271 SVFAKNGNAPNIIIAGPPGVGKTTTILCLARALLGAS 381
+++A + N +I GPPG GKT TIL + A+L +S
Sbjct: 1278 AIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSS 1314
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 32.7 bits (71), Expect = 0.025
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 178 SKPTTNLPWIEKYRPQTFDDIVGNE 252
+KP + W++ YRPQ F D++G+E
Sbjct: 345 TKPQSQKLWVDTYRPQLFRDLLGDE 369
Score = 27.1 bits (57), Expect = 1.2
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 304 IIIAGPPGVGKTTTILCLARALLGASFKDAVLELNASNDR 423
+++ G G GKTT +A A +K VLE+NAS+DR
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQ---AGYK--VLEINASDDR 453
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 31.1 bits (67), Expect = 0.075
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 307 IIAGPPGVGKTTTILCLARALLGASFK 387
+I G PG GKTTTI L R+LL K
Sbjct: 952 LILGMPGTGKTTTISSLIRSLLAKKKK 978
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 30.7 bits (66), Expect = 0.099
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 307 IIAGPPGVGKTTTILCLARALL 372
+I GPPG GKT TI+ + ALL
Sbjct: 1149 LIQGPPGTGKTKTIIGIISALL 1170
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 30.7 bits (66), Expect = 0.099
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 232 DDIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLARALL 372
D ++G E+ + R N + GP GVGKT + LA ++
Sbjct: 111 DPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRII 157
Score = 24.2 bits (50), Expect = 8.6
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 283 KNGNAP--NIIIAGPPGVGKTTTILCLARAL 369
+N N P + + GP GVGKT LA L
Sbjct: 526 QNTNRPLASFLFLGPTGVGKTALTKALAEFL 556
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 30.3 bits (65), Expect = 0.13
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 97 IKMSDDDVTIMEVDEAESKPAKPVAGPSKPTTNLPWIEKYRPQ 225
IK SD+ + + E KPA PV P+ P P YRPQ
Sbjct: 306 IKDSDELLINPKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQ 348
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.9 bits (64), Expect = 0.17
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 298 PNIIIAGPPGVGKTT 342
PNIII G PG GKTT
Sbjct: 9 PNIIICGTPGTGKTT 23
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.30
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 253 DTVSRLSVFAKNGNAP-NIIIAGPPGVGKTTTILCLARALLGASFK 387
D + + KN N P I + G GVGK+TT+ +A LL +F+
Sbjct: 327 DLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFR 372
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 0.40
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 304 IIIAGPPGVGKTTTILCLAR 363
I++ G PGVGKT+ I LAR
Sbjct: 1562 ILLEGSPGVGKTSLITALAR 1581
Score = 26.2 bits (55), Expect = 2.1
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 292 NAPNIIIAGPPGVGKTTTILCLARALLG 375
N P +++ G G GKTTTI LA LLG
Sbjct: 467 NEP-LLLVGETGTGKTTTIQLLA-GLLG 492
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 27.9 bits (59), Expect = 0.70
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 307 IIAGPPGVGKTTTILCLARALLGASFKDAVLELNASND 420
++ GPPG GK+T + + L ++ L+ +ND
Sbjct: 6 VVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPAND 43
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 0.70
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 226 TFDDIVGNEDTVSRLS-VFAKNGNAPNIIIAGPPGVGKTTTILCLARALL 372
T ++ VG + S+++ + G N+++ GP G GK+T I L A L
Sbjct: 8 TLNNYVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHL 57
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.5 bits (58), Expect = 0.92
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 298 PNIIIA--GPPGVGKTTTILCLAR 363
P +I+A GPPG GK+T I L R
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVR 96
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 274 VFAKNGNAP--NIIIAGPPGVGKTTTILCLARALLGASFKDAV 396
+F + G P +++ GPPG GKT +A A LG +F V
Sbjct: 157 LFLRVGIKPPKGVLLYGPPGTGKTLLARAVA-ASLGVNFLKVV 198
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 1.2
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +1
Query: 238 IVGNEDTVSRLSVFAKN----GNAPNIIIAGPPGVGKTTTI-LCLARALLGASFKDAVLE 402
+VG+ D ++L + + G ++II GP G GK+ + L+RA + K V+
Sbjct: 552 LVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVR 611
Query: 403 LNAS 414
LN +
Sbjct: 612 LNGT 615
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 1.2
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +1
Query: 154 PAKPVAGPSKPTTNLPWIEKYRPQTFDDIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVG 333
P K V G + + + ++ Q F + S L A G NI++ P G G
Sbjct: 489 PNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAF-GTDENILLCAPTGAG 547
Query: 334 KT-TTILCLARAL 369
KT +LC+ L
Sbjct: 548 KTNVAMLCILNEL 560
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 310 IAGPPGVGKTTTILCLARALLGASFKDAV 396
+ GPPGVGKT+ +A AL F+ +V
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRFSV 604
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 1.2
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 112 DDVTIMEVDEA-ESKPAKPVAGPSKPTTNLPWIEKYRPQTFDDIVGNEDTVSRLSVFAKN 288
+ V+I++ D + E++ P+AG + ++ L KY T ++ DTV R + F
Sbjct: 2457 EHVSILDFDVSLETQSWYPIAGKTLKSSAL----KYAGNT---VIPTLDTV-RYAEFLNF 2508
Query: 289 GNAPN--IIIAGPPGVGKTTTILCLARA 366
N +I GPPG GK+ +L R+
Sbjct: 2509 SLTKNRCVIFCGPPGSGKSMLMLGTLRS 2536
Score = 24.6 bits (51), Expect = 6.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 220 PQTFDDIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLARALLG 375
P + D+ N +V S+ + G +P GP G GKT T+ ++ A LG
Sbjct: 1862 PIVYTDLTRNCFSVLLHSIASNLGGSP----IGPAGTGKTETVKAVS-AYLG 1908
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 1.6
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Frame = +1
Query: 163 PVAGPSKPTTNLPWIEKYRPQTFDDIVGNEDTVSRLSV-----------FAKNGNAP--N 303
P+ P+ + +E+ T+ D+ G ++ + RL F K G P
Sbjct: 156 PLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKG 215
Query: 304 IIIAGPPGVGKTTTILCLARAL 369
I++ GPPG GKT LC ARA+
Sbjct: 216 IMLYGPPGTGKT---LC-ARAV 233
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 404 SSRTASLKEAPSNARARHRIVVVFPTPGGPAIIMLGAFPFLANT 273
+S+ SL APSN H + P ++ G+FP NT
Sbjct: 144 ASQRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSNGSFPRQTNT 187
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 295 APNIIIAGPPGVGKTTTILCLARALLG 375
+P +I G G GKTT I CL A G
Sbjct: 27 SPLTLIVGQNGSGKTTIIECLKYATTG 53
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 304 IIIAGPPGVGKTTTILCLARAL 369
I++AGPP GKT + +A++L
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSL 89
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 97 IKMSDDDVTIMEVDEAESKPAKPVA-GPSKPTTNLPWIEK 213
I+ D D+T+ + E PA+P+A S P T + I++
Sbjct: 149 IEKRDIDITMADESNVEKDPARPIAVYNSSPVTEITEIKQ 188
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 2.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 289 GNAPN-IIIAGPPGVGKTTTILCLARALLG 375
G P +++ GPPG GKT LARA+ G
Sbjct: 297 GKLPRGVLLTGPPGTGKT----MLARAVAG 322
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 307 IIAGPPGVGKTTTILCLARALL 372
+I GPPG GKT T++ + + L+
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQLV 250
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 298 PNIIIAGPPGVGKTTT 345
P +I GPPG GKT T
Sbjct: 408 PLSLIQGPPGTGKTVT 423
>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 2.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 306 NNSRPARCRKDHYDPM 353
N RPA+ RKDH+ P+
Sbjct: 46 NGMRPAKLRKDHWVPL 61
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 3.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 265 RLSVFAKNGNAPNIIIAGPPGVGKTT 342
R + ++NG A +++ G G+GKTT
Sbjct: 18 RHKIVSRNGVAFTLMLCGESGLGKTT 43
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 3.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 181 KPTTNLPWIEKYRPQTFDDIV 243
+PTTN+PW + ++ +T +V
Sbjct: 201 EPTTNMPWYQGWQKETKAGVV 221
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 235 DIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLARA 366
D+ ++ +R K+ I +AG PG GK+T LA+A
Sbjct: 9 DVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKA 52
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 3.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 181 KPTTNLPWIEKYRPQTFDDIV 243
+PTTN+PW + ++ +T +V
Sbjct: 201 EPTTNMPWYQGWQKETKAGVV 221
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 3.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 175 PSKPTTNLPWIEKYRPQ 225
P+ P T++ WI+ Y P+
Sbjct: 360 PASPNTSISWIQSYSPR 376
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 3.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 181 KPTTNLPWIEKYRPQTFDDIV 243
+PTTN+PW + ++ +T +V
Sbjct: 201 EPTTNMPWYQGWQKETKAGVV 221
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 413 DAFSSRTASLKEAPSNARARHRIVVVFPTPG 321
D + + E SNAR RI+ VF TPG
Sbjct: 300 DEIETTKRVVDEDTSNARISSRILDVFKTPG 330
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 4.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 304 IIIAGPPGVGKTTTILCLARA 366
+++ GPPG GKT + +A +
Sbjct: 171 VLLYGPPGTGKTMLVKAVANS 191
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 310 IAGPPGVGKTTTILCLARALLGASFKDAVL 399
+ GP G GKT +L L R LLG + V+
Sbjct: 91 VGGPVGSGKTALLLQLCR-LLGEKYSIGVV 119
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 4.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 422 RSLDAFSSRTASLKEAPSNARARHRIVVVFPTPGGPAIIMLGAFPFLANTDRRDTVSSFP 243
R L S APS +++ V + PAI+ G PF N + SS
Sbjct: 70 RKLSLKSGNMWDSLNAPSELTSKNPTVSSTTSSANPAIVSNGGSPFYKNPVVANNPSSTF 129
Query: 242 TISSNV 225
+S+N+
Sbjct: 130 DMSTNL 135
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 307 IIAGPPGVGKTTTILCLARAL 369
++ GPPG GKT+ + LA L
Sbjct: 246 LLYGPPGSGKTSFLYALAGEL 266
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 97 IKMSDDDVTIMEVDEAESKPAKPVAGPSKPT-TNL 198
+ S VT ES+P+KP PS+P+ TN+
Sbjct: 289 VAKSKKKVTPAPAPAPESEPSKPSIAPSQPSKTNV 323
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 304 IIIAGPPGVGKTTTILCLARA 366
++ GPPG GKT LA A
Sbjct: 303 VLFHGPPGTGKTLMARALAAA 323
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 6.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 304 CWVHFHF*QTLIDETLYLHFRRYRQTF 224
CW H HF L++ T ++F++ +F
Sbjct: 287 CWFHTHFQPMLVEYTNGINFQQGINSF 313
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 6.5
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 15/61 (24%)
Frame = +1
Query: 226 TFDDIVGNEDTVSRL-----------SVFAKNG---NAPN-IIIAGPPGVGKTTTILCLA 360
+FDDI G ++ V++L VF +G + P +++ GPPG GKT LA
Sbjct: 87 SFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALA 146
Query: 361 R 363
+
Sbjct: 147 K 147
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 304 IIIAGPPGVGKTTTILCLARAL 369
+++ GPPG GKT LA L
Sbjct: 211 VLLHGPPGCGKTMLANALANEL 232
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 6.5
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 109 DDDVTIMEVDEAESKPAKPVAGPSKPTTNLPWIEKYRPQTFDDIVGNEDTVSRLSVFAKN 288
D V MEVDE ++ + G SK L F+ IV + + F K
Sbjct: 168 DSRVKAMEVDEKPTERYSDIGGLSKQIEEL----------FEAIVL---PMQQADKFRKL 214
Query: 289 GNAP--NIIIAGPPGVGKT 339
G P ++ GPPG GKT
Sbjct: 215 GVKPPKGCLMFGPPGTGKT 233
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 24.6 bits (51), Expect = 6.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 184 PTTNLPWIEKYRPQTFDDIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTI 348
P +N I + P ++I N+ S +NG N+I+ G +GKTT +
Sbjct: 83 PNSNGKSIPTFHP--CNNIGINDFNHQHYSRVCRNGIDINLIVVGESSLGKTTFV 135
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 24.2 bits (50), Expect = 8.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 211 KYRPQTFDDIVGNEDTVSRLSVFAKNGNAPNIIIAG 318
KY P FD ++ + + VF N N +II G
Sbjct: 707 KYFPIVFDVLMNISNMAPHVKVFPFNTNQKRLIIHG 742
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -3
Query: 334 FLHRAGLLLLCWVHFHF*QTLIDETLYLHFRRYRQTFEVCTFL 206
F + GL L+CW F F L L F + +VC L
Sbjct: 185 FNYAIGLYLICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLL 227
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 235 DIVGNEDTVSRLSVFAKNGNAPNIIIAGPPGVGKTTTILCLARALLG 375
D+V +++ V + + +A N II VG I CL L G
Sbjct: 312 DVVSDDEVVDIIKLSESPQDAANNIIRYAQNVGAVDDITCLVVRLPG 358
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 304 IIIAGPPGVGKTTTILCLA 360
I + G GVGKTTT LA
Sbjct: 22 IFVGGKGGVGKTTTSCSLA 40
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 8.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 304 IIIAGPPGVGKTTTILCLA 360
+++ GPPG GKT + +A
Sbjct: 316 VLLYGPPGTGKTMVMRAVA 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,562
Number of Sequences: 5004
Number of extensions: 33243
Number of successful extensions: 190
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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