Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F21
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.9  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   8.9  

>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 507 SASNRMSVKTN--PSHEVGVSTRRPKPHPLVFLWHVLPAWREQ 385
           S S   S  +N  PSH    S+RRP  HP  FL  V   +R++
Sbjct: 174 SGSKSASAISNIAPSHSNSTSSRRPYIHP-AFLSQVAVEFRKR 215


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 138 RYSDCLCLKRYRWRGA 91
           R+   +CL+R++WRGA
Sbjct: 10  RFCLFVCLERFQWRGA 25


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 296 LRRSTYYTGGKQREQSRTFSRDFTG 370
           +R    YTGG Q E  + FS  F G
Sbjct: 374 IRLRVDYTGGYQTENPQRFSNRFVG 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,855
Number of Sequences: 5004
Number of extensions: 37827
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)