Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F21
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172           31   0.42 
01_06_0035 + 25782410-25783384,25784130-25784696                       30   1.3  
02_02_0572 + 11667455-11670783,11672026-11672419                       28   3.9  
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838...    27   6.8  

>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
          Length = 618

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 172 KKDGCGHRSQKLSQGTRRFLRRLSTRPSGNCPHRIARLVRITTTIHILY 318
           + DGCG   Q  SQ   R    LS + +   P  + RLV IT  +HI+Y
Sbjct: 543 QNDGCGTSPQAESQSQDRKSVELSVKGAKKGP--MFRLVNITDDLHIIY 589


>01_06_0035 + 25782410-25783384,25784130-25784696
          Length = 513

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = +1

Query: 133 VADLLRNTIRNTRKKDGCGHRSQKLSQGTRRFLRRLSTRPSG 258
           VA LLR+    T ++DG G+ SQKL  GT R   R S R  G
Sbjct: 434 VAKLLRDRKAGT-EEDGGGYVSQKLHAGTGRRHPRASRRGGG 474


>02_02_0572 + 11667455-11670783,11672026-11672419
          Length = 1240

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 323 GKQREQSRTFSRDFTGYQRKDCSRQAGRTCQR 418
           G+ R+Q R   RD  G +R+D  +  GR   R
Sbjct: 212 GRDRDQDRDHDRDREGERRRDRDKDRGRDIDR 243


>01_01_1062 +
           8381281-8381490,8382353-8382449,8382546-8382637,
           8382729-8382860,8382975-8383160,8383244-8383407,
           8383514-8383592,8384484-8384612,8385102-8385229,
           8385348-8385711
          Length = 526

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 263 QLPEGRVLSRLRNLRVP*ESFCER*PQPSF 174
           QL E   LS LRN      +FC   PQPSF
Sbjct: 208 QLNEHTKLSMLRNATWTLSNFCRGKPQPSF 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,662
Number of Sequences: 37544
Number of extensions: 275121
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)