Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F21
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    27   6.0  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    27   6.0  
Z81097-12|CAD56590.1|  457|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z81097-11|CAB03170.2|  485|Caenorhabditis elegans Hypothetical p...    27   8.0  
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    27   8.0  

>Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical
           protein T02E1.2 protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 444 RPKPHPLVFLWHVLPAWREQSFLWYPVKSRENVLDCSRC 328
           RPKP PL  L  +L  W  ++  +  VK  EN     RC
Sbjct: 295 RPKPQPLEVLQLILRLWEAKTVEFEIVKFMENDYYLQRC 333


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 205 AFVNDDRSHPFFLCFLSCCAEDPLLRLFMLETLSVE 98
           AF ND+   P   C+ S C +DP++    +E  +V+
Sbjct: 227 AFFNDNYGPPEGFCWDSLCGDDPIMDNLNIEGYNVK 262


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 486 VKTNPSHEVGVSTRRPKPHPLVFLWH 409
           V  N  H  GV    PKP+   F WH
Sbjct: 699 VTENDRHMTGVDWHWPKPNKPAFFWH 724


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 486 VKTNPSHEVGVSTRRPKPHPLVFLWH 409
           V  N  H  GV    PKP+   F WH
Sbjct: 699 VTENDRHMTGVDWHWPKPNKPAFFWH 724


>Z81097-12|CAD56590.1|  457|Caenorhabditis elegans Hypothetical
           protein K07A1.9b protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 177 LFSCVSYRVAQKIRYSDCLCLKRYRW 100
           + SC   R   K R SD LC + +RW
Sbjct: 341 IHSCPKMRYKAKFRPSDLLCDQSFRW 366


>Z81097-11|CAB03170.2|  485|Caenorhabditis elegans Hypothetical
           protein K07A1.9a protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 177 LFSCVSYRVAQKIRYSDCLCLKRYRW 100
           + SC   R   K R SD LC + +RW
Sbjct: 369 IHSCPKMRYKAKFRPSDLLCDQSFRW 394


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +3

Query: 162 KHKKKGWLRSSFTKAFSRNAKISKTAKHAXXXXXXXXXXXXXXHHYDDPHTIREGSNENS 341
           KHKKK  L  +F +       I KT  +               HH    H I + S E S
Sbjct: 31  KHKKKN-LEMTFNEELQFAENIGKTVSNGMVVADNGDYHLIQSHHQTGHHVIHKRSIE-S 88

Query: 342 LEH 350
           ++H
Sbjct: 89  IDH 91


>U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical
           protein T14E8.4 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 232 RRLSTRPSGNCPHRIARLVRITTTIHILYGREATRTV*NILTRLYRIPKKRLFPPSRKNM 411
           R + TRP  +C  +I  L  ++T  +I  G++ T        ++ ++P K    P RK +
Sbjct: 113 REMCTRP--DCVSKI-ELSEVSTCTYINIGKKCTAEAAQFFAQMQQVPSKLNNLPQRKKL 169


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 183 AILFSCVSYRVAQKIRYS 130
           AILFSC+  R +Q+IRY+
Sbjct: 212 AILFSCILCRSSQEIRYT 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,344,035
Number of Sequences: 27780
Number of extensions: 226607
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)