Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F21
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   10.0 

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 14  WSGTEHANSAVVTSTYRADRQRCD 85
           W+  ++ N + +TS Y+ +   CD
Sbjct: 108 WTWAKNENCSGITSAYKIEIDMCD 131


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 188 PQPSFFLVFLIVLRRRS 138
           P+P   + F++++RRR+
Sbjct: 215 PEPYIDITFVVIIRRRT 231


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 14/70 (20%), Positives = 26/70 (37%)
 Frame = -3

Query: 366 VKSRENVLDCSRCFPPV*YVDRRSDANQTSYPVRTVARGTRA*PXXXXXXXXXXXX*TMT 187
           + + + +LD  R   P   V       QT+Y  + VA GT +               T  
Sbjct: 181 ISTLDAILDIIRNMVPENLVQACFQQAQTTYVTKEVATGTASEITQIQEATLVYKDGTNV 240

Query: 186 AAILFSCVSY 157
             ++  C+++
Sbjct: 241 MGMIVFCITF 250


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 11  HWSGTEHANSAVVTSTYR 64
           +WS  ++ N + +TS YR
Sbjct: 110 NWSWAKNQNCSGITSVYR 127


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 373 PKKRLFPPSRKNMPKKNQR 429
           P  R  PPSRK   ++ +R
Sbjct: 394 PPPRQTPPSRKESGRRRRR 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,508
Number of Sequences: 438
Number of extensions: 2916
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)