Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F20
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   128   3e-31
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   128   3e-31
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    32   0.031
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   1.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   2.0  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    25   4.7  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   4.7  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   4.7  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   6.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   6.2  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   6.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   6.2  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    24   8.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   8.2  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    24   8.2  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  128 bits (309), Expect = 3e-31
 Identities = 55/80 (68%), Positives = 68/80 (85%)
 Frame = +1

Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
           F G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + 
Sbjct: 57  FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-IN 115

Query: 358 IGDIVTIGECRPLSKTVRFN 417
            GD+VT+G+CRPLSKTVRFN
Sbjct: 116 EGDVVTVGQCRPLSKTVRFN 135



 Score = 61.3 bits (142), Expect = 6e-11
 Identities = 30/51 (58%), Positives = 36/51 (70%)
 Frame = +2

Query: 23  QTEKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
           Q+E+AFQKQ  +F N K G  R   R  K+VGLGFKTP EA+ G Y+DKKC
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKC 55


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  128 bits (309), Expect = 3e-31
 Identities = 55/80 (68%), Positives = 68/80 (85%)
 Frame = +1

Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
           F G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + 
Sbjct: 57  FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-IN 115

Query: 358 IGDIVTIGECRPLSKTVRFN 417
            GD+VT+G+CRPLSKTVRFN
Sbjct: 116 EGDVVTVGQCRPLSKTVRFN 135



 Score = 61.3 bits (142), Expect = 6e-11
 Identities = 30/51 (58%), Positives = 36/51 (70%)
 Frame = +2

Query: 23  QTEKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
           Q+E+AFQKQ  +F N K G  R   R  K+VGLGFKTP EA+ G Y+DKKC
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKC 55


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 32.3 bits (70), Expect = 0.031
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 217 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 396
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 397 SKTVRF 414
           S T RF
Sbjct: 64  SATKRF 69


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 369 DVSDFHVPEARR*MNRHVPVSL 304
           DV+ + VPEARR   RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 210 DTASDGHVTRE*HFLSMYVPSTASRGVLKPRPTFL 106
           D    GH  R+ HF   Y P  A+   LK  PT+L
Sbjct: 216 DNGFPGH-RRQTHFAPYYYPQRATSPSLKQVPTYL 249


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 118 TNILRMSHILPFHAPLAIEEH 56
           TN+L+M   LP H    I EH
Sbjct: 16  TNVLKMKKPLPLHMRTKIREH 36


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +2

Query: 2   HEGNMADQTEKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAV 148
           H G   D +   FQ Q    +     + +      KNVGLGF   R  V
Sbjct: 393 HMGFFGDHSTLLFQLQPIHQVYYASNLDKNYCMFDKNVGLGFGLSRHKV 441


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  RKGGMKRKDMRHSKNVGLGFKTPRE 142
           R G     D++ ++N+G+ F+TP +
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQ 218


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 354 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 265
           H PE     NR   ++++K+V+F+Q+ E++
Sbjct: 49  HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 165 SMYVPSTASRGVLKPRPTFLECLISFLFMPPLRLRNTVAC 46
           S++  S+ S  +++   T ++CL +F  +  L   N  AC
Sbjct: 658 SIFSESSLSSPIIEEPKTLIDCLKNFTHVEELSGENMFAC 697


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
 Frame = -1

Query: 324 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 193
           +HV  + L    FR     I  DN  +LHF       H ++   QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 416 LNLTVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 297
           L+ + +   L SP+ T++  +  L  G    D+FL  FSN
Sbjct: 6   LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 365 SPISTSLKQGDR*TDMFLCRFSN 297
           SP   SL  GD   ++FL ++SN
Sbjct: 255 SPFEYSLLSGDNANEIFLTKYSN 277


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 234 HFLNNACQDTASDGHV-TRE*HFLSMY 157
           HF NNACQ  AS       E H +S +
Sbjct: 15  HFHNNACQSNASSSACRASEDHLVSSF 41


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 216 RRCSENENAANNCYQARLSPLPA 284
           R+C+E       C++ R  PLP+
Sbjct: 45  RKCTEQMEEFRKCWEKRHGPLPS 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,801
Number of Sequences: 5004
Number of extensions: 36630
Number of successful extensions: 127
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)