Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F20
(417 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for ... 162 5e-40
BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein. 162 5e-40
BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11 p... 162 5e-40
BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11 p... 162 5e-40
BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11 p... 162 5e-40
BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein. 162 5e-40
BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11 p... 162 5e-40
BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11 p... 162 5e-40
AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11 p... 162 5e-40
AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11 p... 135 5e-32
U52144-1|AAC50455.1| 419|Homo sapiens isocitrate dehydrogenase ... 36 0.041
BC110597-1|AAI10598.1| 411|Homo sapiens ligand-gated ion channe... 29 8.2
BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sortin... 29 8.2
BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sortin... 29 8.2
BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sortin... 29 8.2
AF512521-1|AAO20969.1| 411|Homo sapiens ligand-gated ion channe... 29 8.2
AB223030-1|BAE19924.1| 411|Homo sapiens ligand-gated ion-channe... 29 8.2
>X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for
ribosomal protein S11. ).
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein.
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein.
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 162 bits (393), Expect = 5e-40
Identities = 73/80 (91%), Positives = 78/80 (97%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
FTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+
Sbjct: 62 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQ 121
Query: 358 IGDIVTIGECRPLSKTVRFN 417
IGDIVT+GECRPLSKTVRFN
Sbjct: 122 IGDIVTVGECRPLSKTVRFN 141
Score = 73.7 bits (173), Expect = 2e-13
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 6/60 (10%)
Frame = +2
Query: 14 MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
MAD QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
>AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11
protein.
Length = 83
Score = 135 bits (327), Expect = 5e-32
Identities = 60/66 (90%), Positives = 64/66 (96%)
Frame = +1
Query: 220 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 399
VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1 VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60
Query: 400 KTVRFN 417
KTVRFN
Sbjct: 61 KTVRFN 66
>U52144-1|AAC50455.1| 419|Homo sapiens isocitrate dehydrogenase
protein.
Length = 419
Score = 36.3 bits (80), Expect = 0.041
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -1
Query: 417 IEPDCLGKRPALANCDDVSDFHV 349
+E CL +RPALA+CDDV+D V
Sbjct: 22 VEAHCLAQRPALAHCDDVTDLDV 44
>BC110597-1|AAI10598.1| 411|Homo sapiens ligand-gated ion channel,
zinc activated 1 protein.
Length = 411
Score = 28.7 bits (61), Expect = 8.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 348 PEARR*MNRHVPVSLLKSVVFRQVMEII---APDNNCSLHFHFLNNACQDTASDGHVTRE 178
P+AR + HV ++L + E++ +NCSL F+ L+N + HV E
Sbjct: 134 PQARVDQDGHVKLNLALTTETNCNFELLHFPRDHSNCSLSFYALSNTAMELEFQAHVVNE 193
>BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 14 MADQTEKAFQKQATVFLNRKGGMKRKDMRH 103
+ D+ E+ + KQ V L RKG + RK M H
Sbjct: 276 LIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305
>BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 14 MADQTEKAFQKQATVFLNRKGGMKRKDMRH 103
+ D+ E+ + KQ V L RKG + RK M H
Sbjct: 276 LIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305
>BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 14 MADQTEKAFQKQATVFLNRKGGMKRKDMRH 103
+ D+ E+ + KQ V L RKG + RK M H
Sbjct: 276 LIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305
>AF512521-1|AAO20969.1| 411|Homo sapiens ligand-gated ion channel
subunit protein.
Length = 411
Score = 28.7 bits (61), Expect = 8.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 348 PEARR*MNRHVPVSLLKSVVFRQVMEII---APDNNCSLHFHFLNNACQDTASDGHVTRE 178
P+AR + HV ++L + E++ +NCSL F+ L+N + HV E
Sbjct: 134 PQARVDQDGHVKLNLALTTETNCNFELLHFPRDHSNCSLSFYALSNTAMELEFQAHVVNE 193
>AB223030-1|BAE19924.1| 411|Homo sapiens ligand-gated ion-channel
receptor L2 protein.
Length = 411
Score = 28.7 bits (61), Expect = 8.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 348 PEARR*MNRHVPVSLLKSVVFRQVMEII---APDNNCSLHFHFLNNACQDTASDGHVTRE 178
P+AR + HV ++L + E++ +NCSL F+ L+N + HV E
Sbjct: 134 PQARVDQDGHVKLNLALATETNCNFELLHFPRDHSNCSLSFYALSNTAMELEFQAHVVNE 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,975,207
Number of Sequences: 237096
Number of extensions: 1434462
Number of successful extensions: 3125
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3116
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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