Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F20
(417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical pr... 130 3e-31
Z75713-9|CAB00053.1| 235|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z75713-8|CAB00056.1| 234|Caenorhabditis elegans Hypothetical pr... 29 1.4
M73827-1|AAA27983.1| 234|Caenorhabditis elegans casein kinase I... 29 1.4
AL031629-5|CAA20979.1| 99|Caenorhabditis elegans Hypothetical ... 29 1.4
Z98853-4|CAB57905.1| 301|Caenorhabditis elegans Hypothetical pr... 27 4.1
U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical pr... 27 5.5
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 27 5.5
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 5.5
>Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical
protein F40F11.1 protein.
Length = 155
Score = 130 bits (315), Expect = 3e-31
Identities = 58/80 (72%), Positives = 66/80 (82%)
Frame = +1
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
+ GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+ H SP FRD+
Sbjct: 59 WAGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIH 118
Query: 358 IGDIVTIGECRPLSKTVRFN 417
GD+VTIGECRPLSKTVRFN
Sbjct: 119 PGDLVTIGECRPLSKTVRFN 138
Score = 69.7 bits (163), Expect = 8e-13
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Frame = +2
Query: 14 MADQTEKAFQKQATVFLNRKGGM---KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 175
M++QTE+AF KQ TV LN K + +K R+ + VGLGFK PR+AVEGTYIDKKC
Sbjct: 1 MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKC 57
>Z75713-9|CAB00053.1| 235|Caenorhabditis elegans Hypothetical
protein T01G9.6b protein.
Length = 235
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 132 HP-VRPLKAHTLIRNVIHG*RVHPRPYPDRRCSENENAANNCYQARLSPLPA 284
HP +RP + T ++G ++HP Y + + N ANN A+ + PA
Sbjct: 171 HPDLRPRRPVTQFVPKLYGFKIHPVAYGGQEGNSGGNTANNVAAAQNNTTPA 222
>Z75713-8|CAB00056.1| 234|Caenorhabditis elegans Hypothetical
protein T01G9.6a protein.
Length = 234
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 132 HP-VRPLKAHTLIRNVIHG*RVHPRPYPDRRCSENENAANNCYQARLSPLPA 284
HP +RP + T ++G ++HP Y + + N ANN A+ + PA
Sbjct: 170 HPDLRPRRPVTQFVPKLYGFKIHPVAYGGQEGNSGGNTANNVAAAQNNTTPA 221
>M73827-1|AAA27983.1| 234|Caenorhabditis elegans casein kinase II
beta subunit protein.
Length = 234
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 132 HP-VRPLKAHTLIRNVIHG*RVHPRPYPDRRCSENENAANNCYQARLSPLPA 284
HP +RP + T ++G ++HP Y + + N ANN A+ + PA
Sbjct: 170 HPDLRPRRPVTQFVPKLYGFKIHPVAYGGQEGNSGGNTANNVAAAQNNTTPA 221
>AL031629-5|CAA20979.1| 99|Caenorhabditis elegans Hypothetical
protein Y106G6D.6 protein.
Length = 99
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 224 FRK*KCSEQLLSGAIISITCLNTTDL 301
F KC EQ +SG +++ C NT DL
Sbjct: 45 FHANKCFEQNVSGQLLTFCCCNTDDL 70
>Z98853-4|CAB57905.1| 301|Caenorhabditis elegans Hypothetical
protein R08A2.4 protein.
Length = 301
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 318 VPVSLLKSVVFRQVMEIIAPDNNCSLHFHFLNNACQD 208
+ +SLL+ + QV+ I P+ +L+FH + C D
Sbjct: 148 IDISLLEYLQAVQVLTYIHPETLKTLNFHIYSEKCND 184
>U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical
protein C53B7.3 protein.
Length = 243
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 258 DNNCSLHFHFLNNACQDTASD 196
DN C L+ +NN CQ T S+
Sbjct: 169 DNTCGLNQRCVNNMCQSTGSN 189
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 11 NMADQTEKAFQKQATVFLNR 70
NM+D+TEK+F+ + LNR
Sbjct: 3332 NMSDETEKSFEIPRNILLNR 3351
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 11 NMADQTEKAFQKQATVFLNR 70
NM+D+TEK+F+ + LNR
Sbjct: 3332 NMSDETEKSFEIPRNILLNR 3351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,157,489
Number of Sequences: 27780
Number of extensions: 223583
Number of successful extensions: 584
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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