Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F18
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    30   0.29 
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    30   0.29 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   1.5  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    26   4.7  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   6.2  

>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 599 KRKSVRL*AITVRQCLFIDTFFYTEGSP*LYPP 501
           KRK V++  I VR CLF     Y  G P L  P
Sbjct: 490 KRKDVKIGDIKVRACLFAFDILYLNGQPLLETP 522


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 522 TLSVKKSVYKKALTNCYCLQSDTFPLVHHIRQVLPLPIH 638
           TL  KK V+     N     +DTFP V HI  VL +  H
Sbjct: 138 TLGSKKPVHPNDHVNMSQSSNDTFPTVMHIASVLQIHTH 176


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 626 RENLSYMVNKRKSVRL*AITVRQCLFIDTFFYTEGSP 516
           RE+LS +VN  KS+R       +C  ++ FFY + +P
Sbjct: 300 RESLSILVNYCKSIRFRCF---RCRRVEYFFYLDSNP 333


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +3

Query: 405 DVQPRGRLMFVHTPTLKRSHLHTTRITSIYDVWRVKSR*TLSVKKSVYKKALTNCYCLQS 584
           ++ P+  L    TP LK     T  +    +V    S  +  VK S Y   LTNC     
Sbjct: 70  EMNPKSFLTLRRTPALKLLP-ETLSVELSNEVNLTSSTTSSCVKPSPY---LTNCNLKNK 125

Query: 585 DTFPL 599
           DTFP+
Sbjct: 126 DTFPV 130


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 21/83 (25%), Positives = 32/83 (38%)
 Frame = -2

Query: 266 RPLSVIHETARASQERLRWDIVRVDGETLXXXXXXXXXXXXXXXXASKVAPRVKVGAASA 87
           +PL + + ++  + + LR   +  DG  L                +  V P V  GA  A
Sbjct: 142 KPLILNNGSSGGTPKNLRSPAIDSDGTVLAPIQTSNVDLGSQYYSSPHVRPAV--GATMA 199

Query: 86  ERVVRTFPLGSIRARVRPRADSA 18
              +RTFP         P +DSA
Sbjct: 200 GSAMRTFPSNLPLGHPPPPSDSA 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,721
Number of Sequences: 5004
Number of extensions: 49770
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)