Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F18
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    31   0.62 
U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    31   0.82 
U49954-6|AAA93428.1|  123|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    29   4.4  

>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 349 FFYF-IAFLYNMSLKYCCTFVYICR-SRLFGRCPSFMK 242
           FFYF + FLY   LK  C+F+  C  +R+  +  SF++
Sbjct: 150 FFYFPLKFLYESDLKCACSFIITCETTRIAMKVHSFIR 187


>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 352 YFFY-FIAFLYNMSLKYCCTFVYIC 281
           Y  Y  I FL+++  K CC FVY+C
Sbjct: 307 YMTYGLILFLFHLPTKNCCRFVYVC 331


>U49954-6|AAA93428.1|  123|Caenorhabditis elegans Hypothetical
           protein Y102E9.3 protein.
          Length = 123

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 309 SIVVLLFTFAGAA--CSAVVRHS*NRPGEPRTVAVGY 205
           SI +LL TFAGAA  C+ V +HS  +   P TV + +
Sbjct: 6   SISLLLVTFAGAAEMCAPVTQHSTPQSDVPSTVTITF 42


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 397  SQHTHTHNTDRGRARYFFYFIAFLYNMS 314
            + H    N+DRG A + FY   F+Y+ S
Sbjct: 1426 TNHRRLTNSDRGPASFVFYVFDFIYSYS 1453


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 397  SQHTHTHNTDRGRARYFFYFIAFLYNMS 314
            + H    N+DRG A + FY   F+Y+ S
Sbjct: 1426 TNHRRLTNSDRGPASFVFYVFDFIYSYS 1453


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 397  SQHTHTHNTDRGRARYFFYFIAFLYNMS 314
            + H    N+DRG A + FY   F+Y+ S
Sbjct: 1426 TNHRRLTNSDRGPASFVFYVFDFIYSYS 1453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,838,107
Number of Sequences: 27780
Number of extensions: 297078
Number of successful extensions: 668
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)