Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F17
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    33   0.038
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    30   0.27 
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    28   0.82 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   1.9  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   2.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   3.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.4  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   5.8  

>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 32.7 bits (71), Expect = 0.038
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 273 GFAYGQQPTAMQYPN-VNPIQTAPPVGFGYPNVSPTPAFTPVIEWVPTT 416
           G+ YG +P  + Y +   P+   P V  G P+V    A+TP +  +PTT
Sbjct: 342 GYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSV----AYTPPVMHIPTT 386


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 273 GFAYGQQPTAMQYPNVNPIQTAPPVGFGYPNVSPTPAFTPV 395
           G   GQ P  +  P      TAPP   G+   +P P F PV
Sbjct: 107 GIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPGFRPV 147


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 222 QLSYPAPGQNPQYGYQPGFAYGQQPTAMQYPNVN 323
           Q +YP  G  P  GY  G    QQP  +Q P  +
Sbjct: 30  QQNYPQQGYAPPQGYPQGGYPAQQPMYVQQPQAS 63


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 360 PNVSPTPAFTPVIEWVPTTPRDAQYVL 440
           PN+SP   F  +++  PT+P+   + L
Sbjct: 270 PNISPVSPFAQLVKLEPTSPQKPSFAL 296


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = +3

Query: 276 FAYGQQ----PTAMQYP-NVNPIQTAPPVGFGYPNVSPTPAFTPVIEWVPTTPRDAQYVL 440
           F+YGQ     P+  + P N    Q APP         P P   P  +  PTTPR +   L
Sbjct: 394 FSYGQHTSNVPSTQKLPSNFRVTQGAPPSH----TYGPPPPVQPKPKISPTTPRLSTLAL 449

Query: 441 SD 446
           +D
Sbjct: 450 AD 451


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +3

Query: 312  PNVNPIQTAPPVGFGYPNVSPTPAFTPVIEWVPTTPRDAQYVLSDRAVV 458
            P V P  TAPPV      + P P  T     VP    +A  V + R+ V
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSV 1256


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 71  RVYCAIYNKNNVWISVRKQPSSISATTGLDIS 166
           +V+ A    ++VW++V+ Q  S+S  + LD+S
Sbjct: 230 QVHKARLKDSDVWVAVKVQHPSVSLNSPLDLS 261


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = +3

Query: 243 GQNPQYGYQP-GFAYGQQPT---AMQYPNVNPIQTAPPVGFGYPNVSPTPAFTPVIEWVP 410
           G N  +G  P  +  G   +   A Q P+ + +  AP V      VSP P+F P     P
Sbjct: 121 GFNNNFGLAPRNYVEGMDASSAPASQEPSASGVN-APTVSAPNSMVSPPPSFQPPSAAAP 179

Query: 411 TTPRDAQY 434
            T   + Y
Sbjct: 180 ATSLPSDY 187


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/14 (78%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +3

Query: 225 LSYPAPGQNP-QYG 263
           LSYP PG NP QYG
Sbjct: 87  LSYPIPGTNPAQYG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,716
Number of Sequences: 5004
Number of extensions: 45943
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)