Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F17
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 228 SYPAPGQNPQYGYQPGFAYGQQPTAM 305
           S P P Q P  G  PG    Q P+ M
Sbjct: 38  SPPNPSQGPPPGGPPGAPPSQNPSQM 63


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 266 IAILRILPGCRVAKLTGRRRLTGWW 192
           +AI  +  GC V    G   L G+W
Sbjct: 67  LAIADLFVGCLVMTFAGVNDLLGYW 91


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 474 YDGSPLWVIRARFEGDLIPGKLAV 545
           Y G   W +  R E  +IPG + +
Sbjct: 36  YSGGSDWRVAGRSESVVIPGDIVL 59


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +3

Query: 240 PGQNPQYGYQPGFAYGQQPTAMQYP 314
           PG  P   Y  G  + Q+P    +P
Sbjct: 293 PGYYPTMTYSNGLPFPQRPIWSNFP 317


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +3

Query: 240 PGQNPQYGYQPGFAYGQQPTAMQYP 314
           PG  P   Y  G  + Q+P    +P
Sbjct: 293 PGYYPTMTYSNGLPFPQRPIWSNFP 317


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 236 RVAKLTGRRRLTGWWCIHLIVH 171
           R   + GR++ +GW  +  IVH
Sbjct: 121 RNPSVVGRKKSSGWRKLRNIVH 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,961
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)