Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F15
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    27   1.4  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   5.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   7.3  
SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.3  

>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 284 ILPSEAKRPAVHDVLRFQQRETKEEVEV*NLLKITNGNYXVFFFTIF*ETKF 439
           +LPS      VH VL  Q  ET    E+ + + I + N  + FF +  E+ +
Sbjct: 452 VLPSVPDIRCVHSVLTSQLNETTGRCEMTDSIIIASSNETIKFFDLSEESSW 503


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 51  DEPHCRKEYNYQFNLNNSNYVEW 119
           D PH   E +++ N +N N + W
Sbjct: 2   DRPHLFSEVHFRRNASNPNQINW 24


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 340 LLESKNIVNCWSFSFRGKYIPADRRPL 260
           LL SKN +  +  +FR  Y  +DRRPL
Sbjct: 333 LLSSKNSLMSFYKAFRILYALSDRRPL 359


>SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 88

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 397 VTVCNFKKVSNFNFFLCFPLLESK 326
           + +   K +  FNF LC  L++SK
Sbjct: 59  LAISRHKAIKPFNFSLCLKLIDSK 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,490
Number of Sequences: 5004
Number of extensions: 36686
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)