Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F15
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917...    32   0.34 
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095...    29   1.8  
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344...    27   9.8  

>03_02_0955 -
           12690405-12690842,12690940-12691130,12691208-12691718,
           12692240-12693171,12693260-12693351,12693430-12693509,
           12693568-12693621,12693734-12693850,12693949-12694194,
           12694273-12694432,12694512-12694576,12694686-12694877,
           12694980-12695061,12695153-12695925
          Length = 1310

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 63  CRKEYNYQFN-LNNSNYVEWHERETRGTVIKERLSLIYVGRAYLSAVSVTEKRNLVWDLR 239
           C K  N +FN + N N  E H     G +++  +S   VGR   S + V    N    LR
Sbjct: 556 CFKIENAKFNKIVNVNNHEMHIGSASGLLLRRIMSYCQVGRLSSSDLFVKALSNTQKYLR 615

Query: 240 SLLARDPKGR 269
             LA D +G+
Sbjct: 616 KCLAEDQRGQ 625


>08_02_1101 -
           24308433-24308978,24309195-24309364,24309443-24309542,
           24310337-24310500,24310960-24310996,24311222-24311262,
           24313877-24314093
          Length = 424

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 137 GNCYQGTSVFDLCR*GLPVSRQRHRKAKLG 226
           G+C+ G    D CR G  V  +RHR A  G
Sbjct: 28  GSCWDGDGSIDKCRCGGGVCERRHRLAVFG 57


>08_02_1367 +
           26432425-26432622,26434071-26434162,26434337-26434403,
           26434519-26434638,26434792-26435023,26435525-26435606,
           26435985-26436117,26436332-26436537,26436633-26436758,
           26437208-26437907
          Length = 651

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51  DEPH-CRKEYNYQFNLNNSNYVEWHERETRGTVIKER 158
           DEP  C     YQF   ++NYV W +   R  +I +R
Sbjct: 109 DEPLLCTAPIKYQFANYSANYVYWGKGSIRFQLINQR 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,740
Number of Sequences: 37544
Number of extensions: 234795
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)