Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F15
         (547 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2997|AAF57480.2|  523|Drosophila melanogaster CG13868-P...   131   7e-31
AF365402-1|AAK53387.1|  467|Drosophila melanogaster gag protein.       30   1.8  

>AE013599-2997|AAF57480.2|  523|Drosophila melanogaster CG13868-PA
           protein.
          Length = 523

 Score =  131 bits (316), Expect = 7e-31
 Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
 Frame = +3

Query: 12  DRCYPHTGWFIQSDEPHCRKEYNYQFNLNNSNYVEWHERETRGTVIKERLSLIYVGRAYL 191
           D+ YPHTGWF QS EPH +++Y Y ++  N  +VEW ERE RG     + SLIYV + Y+
Sbjct: 336 DQSYPHTGWFTQSKEPHLQRDYCYAYSQQNGKFVEWKEREIRGEDTSYKTSLIYVAQEYI 395

Query: 192 SAVSVTEKRNLVWDLRSLLARDPKGRLSAGIYFPLKLKDQQ--FTMFFDS-NNGKQRKKL 362
           +A+ VT +RNLV++ RSLL+RD KG++ AGIYFPL    Q+   T+F+D  N  + R KL
Sbjct: 396 TAIDVTVRRNLVYNFRSLLSRDAKGQVYAGIYFPLVANGQEAYLTIFYDGPNEQRVRTKL 455

Query: 363 KF 368
            F
Sbjct: 456 MF 457


>AF365402-1|AAK53387.1|  467|Drosophila melanogaster gag protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +3

Query: 138 GTVIKERLSLIYVGRAYLSAVSVTEKRNLVWDLRSLLARDPKGRLSAGIYFPLKLKDQQF 317
           G +   R S  +V + Y      T  R L  DL  LLA      L + +++ LKL++Q F
Sbjct: 210 GCMQMSRESEHFVTKMYREKALDTFIRGLRGDLPRLLAIKEPADLPSALHYCLKLENQTF 269

Query: 318 TMFFDSNNGKQ 350
                +N G+Q
Sbjct: 270 RSNHAANKGQQ 280


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,441,963
Number of Sequences: 53049
Number of extensions: 412308
Number of successful extensions: 822
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2069139900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)