Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F15
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical
           protein K09B11.2 protein.
          Length = 549

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 152 LDNSSPGLPLVPFNIVAVVQIELVIVFLAA-MRLVGLYEPP 33
           +D +SP L  + F I+  V +E  I+F+   + L+ L EPP
Sbjct: 451 IDGNSPALQCIGFGIIRGVSVEERIIFVVTPVDLLKLEEPP 491


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 185 SPTDIDQRQTFLDNSSPGLPLVPFNIVAVVQIELVIVFL 69
           S TD+D   +     S  LP +PF+I  +  I L+I+FL
Sbjct: 670 SATDLDSSFSTTIAPSDSLPSIPFHIFVLTIIGLIILFL 708


>Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical
           protein T01G5.3 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -1

Query: 400 IVTVCNFKKVSNFNFFLCFPLLESKNIVNCWSFSFRGKYIPADRRPLGSLANRLLKSHTK 221
           IV +C F     F++F+   L E K+ +   +   R  +IPA        A  +L SH  
Sbjct: 60  IVPLCIFDYKRAFSYFVVTGLFEKKSALGAIAICIRCSFIPA--------AYGILHSHFI 111

Query: 220 FRFSV 206
           +R+ V
Sbjct: 112 YRYMV 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,952,821
Number of Sequences: 27780
Number of extensions: 214185
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)