Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F13
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.77
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.77
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.3
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 3.1
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 3.1
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 26 4.1
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 5.4
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.2
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 7.2
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 398 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 505
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 542 SYKDLVMPLITQLVDNLKSKQITDIKITSRDTI*YP 649
S+K +V PL TQL ++ + ITD++ TS T +P
Sbjct: 1204 SFKRVVTPLGTQLRKDILNDSITDMENTSSFTASFP 1239
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 435 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACL 292
V+R + SGS+ G S SA A S SLA + P+ A C+
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVCV 170
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 47 RGLLGDGNNEPYDDFRLPNGKI-CTSESEF 133
RG+L D +N DDF L N +I SE EF
Sbjct: 38 RGILYDSDNRVVDDFFLNNKRIVLDSEIEF 67
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 3.1
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = -1
Query: 588 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 421
++TN V + I++ S TT S+ + +S +S M+ SAS
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472
Query: 420 ASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 325
+SGS++GSS +SA+ + L+R + LA S
Sbjct: 473 SSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +3
Query: 78 HTMTSDYLTERSAHLRVNLATHIA--WRAA--VLKSRL---PSTPTTRCTLLCHQPVNR 233
H M+ D LT+ + NL T IA W + K L P+ PTT+C L C + + R
Sbjct: 45 HLMSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNCMRLLTR 103
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 62 DGNNEPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQT 178
DGN Y FR PN + T+ A L+R C K++T
Sbjct: 36 DGNLLLYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKT 74
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 447 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 322
L S +R + ++ PVR S A R +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 487 WHFELINVSDGVRLVRVGAAHASVRQ 410
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 414 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 310
GS + PV+ S YP+A Q S+ +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,376
Number of Sequences: 5004
Number of extensions: 51337
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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