Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F13
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   3.8  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    29   3.8  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   3.8  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   3.8  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    29   3.8  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   3.8  
Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical
           protein R06A4.8 protein.
          Length = 1467

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 2   HEGYFEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYS 148
           H+GY E+  F  G + G     ++E    F + +  I   +SEF +A S
Sbjct: 805 HDGYIELTNFPTGSVVGFKIRPSDEATKAFNMIHNSITPEQSEFDSALS 853


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 50   GLLGDGNNEPYDDFRLPNGKI 112
            GLLG  NN+P DD   P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 470  YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 601
            Y L++PN Q +    ++   SN+    D    L  +L D+ K K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 4397


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 470  YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 601
            Y L++PN Q +    ++   SN+    D    L  +L D+ K K
Sbjct: 3714 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 3757


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 470  YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 601
            Y L++PN Q +    ++   SN+    D    L  +L D+ K K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 4397


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 470  YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 601
            Y L++PN Q +    ++   SN+    D    L  +L D+ K K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 4397


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 470  YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 601
            Y L++PN Q +    ++   SN+    D    L  +L D+ K K
Sbjct: 3714 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 3757


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 470  YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 601
            Y L++PN Q +    ++   SN+    D    L  +L D+ K K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 4397


>Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical
           protein C54G4.9 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 545 YKDLVMPLITQLVDNLKSKQITDIKITSRDTI 640
           Y  ++ P+  QLVD +K KQ+   K TS + +
Sbjct: 399 YHKILQPMHEQLVDFVKLKQVESNKATSEEEV 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,693
Number of Sequences: 27780
Number of extensions: 309559
Number of successful extensions: 840
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)