Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F12
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    28   1.1  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   3.2  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   5.7  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   7.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.5  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   9.9  

>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 488 WVNSEVLATVMSICSCIR 541
           WVNSE L+T + IC+ IR
Sbjct: 202 WVNSENLSTTVLICTAIR 219


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
 Frame = +2

Query: 269 DEKPLTAAR--VGENKY-----QVSWTEEPAKARSGVHEINILDEEGWASLRRARR-SDP 424
           D+KP  AA   +G N       QVS   EP KA +   ++N LD+E   ++   ++ S+P
Sbjct: 534 DDKPSPAAAEDIGTNGAIEEIPQVSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQSSEP 593

Query: 425 TA 430
           TA
Sbjct: 594 TA 595


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 447 SNGATVAVGSERRARRSDAQPSSSR 373
           SN  T  +GSERR R  +A   SSR
Sbjct: 157 SNFRTFDIGSERRRRILEASQDSSR 181


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -1

Query: 365 FHELRSGPLLALQSRIPDTYFLQLEPLLMVFH 270
           F+ +++ PLL  ++ +P  YF  +  +  +F+
Sbjct: 183 FYGIQNDPLLCTRTHLPSKYFTSVSWMTQMFY 214


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 444 YSLFNSIILAVTLAPGLIQKFLLR 515
           +S F SI+ A+  A GL+ K LLR
Sbjct: 543 WSTFFSILFAIDFAVGLLVKALLR 566


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
 Frame = +3

Query: 324 GLKSQQRP--APEFMKSTSWMRRVGRHSAALVAP----TRLPLLLHYSL-FNSI-ILAVT 479
           G+KS   P  A +  K   +++     S  +V P    +R  ++ ++S+   S+ +LA T
Sbjct: 206 GIKSNVSPLMAEQLPKIPPYVKTKKNGSKVIVDPVVTTSRAYMIFYWSINVGSLSVLATT 265

Query: 480 L---APGLIQKFLLRLCLFVVAYVAL 548
                 G +  +LL LC+FV+  + L
Sbjct: 266 SLESTKGFVYAYLLPLCVFVIPLIIL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,435
Number of Sequences: 5004
Number of extensions: 47709
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)