Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F12
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    32   0.35 
03_03_0120 - 14608688-14608936,14609249-14609638                       30   1.4  
07_03_0295 - 16345592-16345947,16346265-16346697                       29   1.9  
09_04_0127 + 14883661-14884226,14884335-14885235                       29   3.3  
04_04_1286 + 32387687-32387908,32388046-32389494                       28   4.4  
03_01_0275 + 2121758-2122693                                           28   4.4  
03_06_0191 - 32228642-32228949,32229028-32230567                       27   7.6  
03_06_0137 - 31937541-31939892                                         27   7.6  

>11_01_0101 -
           738305-738556,738723-738977,739306-739554,739649-739843,
           739953-740060,740184-740405,740806-741390,741495-741863,
           742423-742529,742755-742883,743027-743084,743166-743248,
           744115-744196,744274-744350,744477-744560,744649-744718,
           744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 341 KARSGVHEINILDEEGWASLRRARRSDPTATVAPLLAIQLHHPGSYS 481
           K +SG+  IN L +  + S+RR RR    A +AP L   +  P  ++
Sbjct: 602 KEKSGIPNINWLRDRLFRSIRRRRRRGALAPLAPTLTTAIAMPSCFT 648


>03_03_0120 - 14608688-14608936,14609249-14609638
          Length = 212

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 375 WMRRVGRHSAALVAPTRLPLLL 440
           W+R  GRH+AAL  P R+PL L
Sbjct: 65  WLRCRGRHAAALKRPYRVPLPL 86


>07_03_0295 - 16345592-16345947,16346265-16346697
          Length = 262

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 362 HELRSGPLLALQSRIPDTYFLQLEPLLMVFHQLQHTMRSSQAVDCRISV 216
           H LRS PLL     I     L+  P  +V+++   T+ S +AVD +++V
Sbjct: 149 HWLRSHPLLEYMYNISYRTALKETPFKIVYYRDPPTILSYEAVDTKVAV 197


>09_04_0127 + 14883661-14884226,14884335-14885235
          Length = 488

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 411 VAPTRLPLLLHYSLFNSIILAVTLAPGLIQKFLLRLCLFVVA 536
           +AP   P LL   L  S++ AV  AP    + L  LC  V A
Sbjct: 270 IAPANAPHLLSAGLAPSLVAAVGDAPAAADRALAALCNLVAA 311


>04_04_1286 + 32387687-32387908,32388046-32389494
          Length = 556

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 354 EFMKSTSWMRRVGRHSAALVAPTRLPLLLHYSLFNSIILAVTL 482
           E+ K+T   R+    S A+ +  R   L HY +F+  ILAV++
Sbjct: 224 EWFKTTELQRKFTERSPAVQSNLRDNSLYHYCVFSDNILAVSV 266


>03_01_0275 + 2121758-2122693
          Length = 311

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 299 GENKYQVSWTEEPAKARSGVHEINILDEEGWASLRRARRSDP 424
           G++K Q+  T  P+  R  V E++  D   WASL R    DP
Sbjct: 81  GKHKGQMLGTLPPSYLRWVVAELDYGDTAAWASLAREVLDDP 122


>03_06_0191 - 32228642-32228949,32229028-32230567
          Length = 615

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 324 GLKSQQRPAPEFMKSTSWMRRVGRHSAALVAPTRLPLLLHYSLFNSIILAVTLA 485
           G+  Q  P+P     TS  +    H A+L AP+R     H +   SI+ A++ A
Sbjct: 22  GISGQPPPSPHAAAPTSTPQAFHAHLASLAAPSR---AAHPATLRSILAALSRA 72


>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 449 AIQLHHPGSYSGPWVNSEVLATVMSICSCIRC 544
           AI L       GP  NS  LA V+S+C+ + C
Sbjct: 394 AIDLFRSMITCGPEPNSYTLAAVLSVCASLAC 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,843
Number of Sequences: 37544
Number of extensions: 321294
Number of successful extensions: 842
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)