Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F10
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    25   7.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   9.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   9.3  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   9.3  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/43 (20%), Positives = 19/43 (44%)
 Frame = -1

Query: 436 SLKLNPTFXXXXXXXXXXYVC*YRTITFYFIQPYQTKKCICKV 308
           + +  PT            +   + +T +F+QP +  K +C+V
Sbjct: 24  TFETQPTISKSEIFETLRSILVTKYLTTFFVQPLEVAKTVCQV 66


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 30  PMSCG*DFNLVSALPSSNRTVAYPART 110
           P SC   +NL+    SSNR   +PA T
Sbjct: 338 PPSCEVSYNLLLTCRSSNRFRLFPAST 364


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 67   RYQAPTERWPILLELSMELCRHLRMYATRCL 159
            R QA  ++W    ++S +L R  R+Y   CL
Sbjct: 1750 RVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 67   RYQAPTERWPILLELSMELCRHLRMYATRCL 159
            R QA  ++W    ++S +L R  R+Y   CL
Sbjct: 1750 RVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 408 IYNKLIIFITFVNIGL*LSTSFNPIKQRNVYARYGVFGGI 289
           ++  LI+F++F+N  L L  SF  + Q     R  ++  +
Sbjct: 518 LWISLILFVSFLNRRLILHYSFESVHQLKTLTRKFIYSSL 557


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 319 ICKVWSFWRDLSLTCSNCFL*FIKLVYLTLYHVIL 215
           +C  W+ W+ L L  S  F+ F++L    LY   L
Sbjct: 520 LCSCWNLWKKLRLPVS-AFV-FLELTITALYETKL 552


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 293 PPKTPYLAYTFLCLIGLNEV 352
           PPK P   +T  CL+GL+ +
Sbjct: 308 PPKRPDQYHTCYCLLGLSSI 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,022
Number of Sequences: 5004
Number of extensions: 41054
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)