Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F09
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    27   1.4  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   3.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.8  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   7.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   7.7  

>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 192 WILFTILFCYANP*LFWRN*NSLRYAE*LQVLYLCYSYMVYLHSYV 329
           WI+F +      P  F +  +SLR+   + ++ LCY   + L+ ++
Sbjct: 142 WIVFALFVL--TPLSFLKRLDSLRHTSVISLIALCYLVFIVLYHFI 185


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 285 LYLCYSYMVYLHSYVFSKN 341
           +Y  Y Y  YL ++VF++N
Sbjct: 77  IYFFYQYSTYLENFVFARN 95


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 367 CLFVLSK*QFLLNTYECRYTIY 302
           CLFV++    LL  ++C Y+++
Sbjct: 169 CLFVINHILILLGYFQCSYSVF 190


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 156 NSST*I*K*LLNWILFTILFCYANP*LFWR 245
           +S T + K + N ++ TIL C+ N   +W+
Sbjct: 14  HSCTVVEKCITNLLITTILLCFFNATTYWK 43


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 428 YSQFLVTLMKVVTILINKIEVSLCTVKMTIFTE 330
           YSQF++ L+     L +K  VS   + MT FT+
Sbjct: 459 YSQFVLLLIPTFACLTSKQLVSSELLHMTTFTQ 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,002
Number of Sequences: 5004
Number of extensions: 32044
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)