Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F08
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    30   0.19 
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    26   3.1  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   3.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   4.1  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   7.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   7.2  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    25   9.5  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +2

Query: 53   VQCPLSVVKTIGRAISLKGYNKPRTVLISGGSSVQALHLARNFHSAGARIVAFE--IEEQ 226
            V+ P++  K  G   + + YN      I      + LHLA          + F+   E+ 
Sbjct: 888  VKVPVNWCKMSGTKKTNRYYNDELRKKIKKLLEAEELHLAIMSRMQEKFYIRFDSNYEQW 947

Query: 227  FALLKYSAAVHKFYSIPRPNPADPLAYARALKEIVERESVVFY 355
             AL+KY+A++  F+S+ +   A    Y R   EI+E++    Y
Sbjct: 948  LALIKYTASIDCFFSLSQAAAALGEPYCR--PEIIEQKDGHLY 988


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 400 RQSVIVRWSR*TNWNIEHDRLPFNDF 323
           +Q V+ RW    NW I  ++LP  +F
Sbjct: 338 KQKVLDRWRAKLNWGIPLEQLPVMEF 363


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 239 KYSAAVHKFYSIPRPNPADPLAYARALKEIVERESVVFYIPVSS 370
           +Y+ A      IPRP P+    +   +  I  RE VVFY P++S
Sbjct: 228 QYTPAGEIKLRIPRP-PSLENYFVECISWIENREFVVFYSPLTS 270


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 261 LCTAAEYFNNANCSSISNATILAPAEWKFLARCRACTEL 145
           L +  E FNNA  S  SN   + P EW    R    T L
Sbjct: 122 LLSLQERFNNAENSGHSNYYPVGPPEWAPYTRLMTQTSL 160


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 130 NGAGLIIPLQTDST-ANRLNNTQGALHAFPEYEQR 29
           +G+  ++P +   T    LNN   A+HA+ E EQ+
Sbjct: 746 SGSNEVLPFRFSPTMCILLNNIHFAMHAYEELEQK 780


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 393 LWRNLIWRSLAASASFLVQEMSSLLTIRW---NSCVYVEPLDSPTQNS 527
           ++ N +W S A   S L    SSLL  RW    S ++ E  D  T++S
Sbjct: 824 IYLNPMWASAAMMFSSLSVLASSLLLRRWKKPKSLIFSEADDVETESS 871


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 261 LCTAAEYFNNANCSSISNATILAPAEW 181
           LC   +YFN  +C ++       P +W
Sbjct: 602 LCLVMDYFNGGDCETLIQKLGPLPEQW 628


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 130 NGAGLIIPLQTDSTANRLNNTQGALHAFPEYEQ 32
           NG G+IIP+   +T  R  +   AL      EQ
Sbjct: 273 NGKGMIIPIPGSTTVQRAESNLSALKKSLSSEQ 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,655
Number of Sequences: 5004
Number of extensions: 49292
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)