Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F08
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0907 - 7636725-7637681                                           31   0.59 
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418...    30   1.0  
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413...    29   3.2  
05_01_0257 + 1967471-1967695,1968571-1969395                           27   7.3  
04_04_0748 + 27738155-27740290                                         27   7.3  
01_05_0073 - 17899175-17899756                                         27   9.7  

>07_01_0907 - 7636725-7637681
          Length = 318

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 177 FLARCRACTELPPLIRTVRGLLYPFKLIA 91
           FLAR  A    PPL+ T  G+ YPF  +A
Sbjct: 187 FLARSNAAVHPPPLMSTAAGVSYPFGDVA 215


>06_01_0584 -
           4178391-4178732,4178854-4178915,4180361-4180481,
           4180592-4180732,4180830-4180959,4182306-4182436,
           4182528-4182601,4182680-4182741,4183135-4183209,
           4184658-4184760,4184835-4184991,4185549-4185743,
           4186204-4186282,4186697-4186806,4187249-4187374,
           4187475-4187541,4187622-4187791,4187880-4188018,
           4188361-4188522,4188672-4188772,4188852-4188994,
           4189438-4189537,4190364-4190414,4191062-4191169,
           4191279-4191494,4191585-4191721,4191820-4191915,
           4192017-4192234,4192764-4192925,4193006-4193163,
           4194221-4194379
          Length = 1364

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
 Frame = +2

Query: 101 LKGYNKPRTVLISGG---SSVQALHLARNFHSAGARIVAFEIEEQFALLKYSAAVHKFYS 271
           LK Y+    VL++G    +++  L +  +F    +     +++E+F  +     V K + 
Sbjct: 401 LKEYHTKHRVLLTGTPVQNNLDELFMLMHFLEGDSFGSIADLQEEFKDINQDKQVEKLHG 460

Query: 272 IPRPNPADPLAYARALKEIVERESVVFYIPVSSTTPAYYDALAKPHLEVI 421
           + +P+          +KE+  ++ ++  + ++S    YY A+   + EV+
Sbjct: 461 MLKPHLLRRFK-KDVMKELPPKKELILRVELTSKQKEYYKAILTKNYEVL 509


>08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,
            4131134-4131987
          Length = 1061

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +2

Query: 107  GYNKPRTVLISGGSSVQALHLARNFHSAGARIVAFEIEEQFALLKYSAAVH 259
            G++K  +    G SS+Q + +  N    GAR  A E+EE  A L ++AA+H
Sbjct: 889  GFDKLFSFAHLGRSSLQQVQV--NIQCRGAR--AMEVEEAEAALAHAAAIH 935


>05_01_0257 + 1967471-1967695,1968571-1969395
          Length = 349

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 104 KGYNKPRTVLISGGSSVQALHLARNFHSAGARIVAFEIEEQFALLKYSAAVHKFYSIPR- 280
           KG  +   V++SG  S+   HL+ +FH   A   A  I+  +A    +A V +   + R 
Sbjct: 181 KGLTQGELVILSGAHSIGVAHLS-SFHDRLAAATATPIDATYA-SALAADVERQKGVQRT 238

Query: 281 PNPAD 295
            NPA+
Sbjct: 239 DNPAE 243


>04_04_0748 + 27738155-27740290
          Length = 711

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 519 GLASPAALHTRMSSNGSSRVTTSLAQGTK 433
           G++SPAAL + +SS+G   +T+S    +K
Sbjct: 183 GVSSPAALASDLSSSGGRSLTSSSGSNSK 211


>01_05_0073 - 17899175-17899756
          Length = 193

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 510 SPAALHTRMSSNGSSRVTTSLAQGTKHWQP 421
           SP+AL TR   +G  +  + LA     WQP
Sbjct: 74  SPSALPTRPKLSGKRKAASDLAWRQGQWQP 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,522,624
Number of Sequences: 37544
Number of extensions: 353532
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)