Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F08
         (544 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF064807-1|AAD32304.1|  329|Homo sapiens vinexin beta protein.         30   4.6  
AL834440-1|CAD39100.1|  271|Homo sapiens hypothetical protein pr...    30   6.0  

>AF064807-1|AAD32304.1|  329|Homo sapiens vinexin beta protein.
          Length = 329

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 531 TQNFGLASPAALHTRMSSNGSSRVTTSLAQGTKHWQP 421
           TQNFG   PA  H+R  S+     T+S      HW P
Sbjct: 238 TQNFGTPGPALSHSRGPSHPLDLGTSSPNTSQIHWTP 274


>AL834440-1|CAD39100.1|  271|Homo sapiens hypothetical protein
           protein.
          Length = 271

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 302 QGGRPDSVWESNRTYALQQNISTTRTVPLSRMRRF*HRPSGNSSPDV 162
           +G +P+  W S RT   Q   +     P+++M+ + H P  N   DV
Sbjct: 174 RGAQPEKTWLSGRTLQEQPWRTECSWAPMAQMQSYPHCPVENREDDV 220


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,803,601
Number of Sequences: 237096
Number of extensions: 1810531
Number of successful extensions: 3878
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3878
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)