Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F08
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81581-10|CAN86611.1|  309|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z81581-9|CAN86610.1|  307|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U58749-6|AAU05599.2|  276|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical ...    28   5.0  

>Z81581-10|CAN86611.1|  309|Caenorhabditis elegans Hypothetical
           protein T02E1.5b protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 122 RTVLISGGSSVQALHLARNFHSAGARIVAFEIEEQ 226
           +TVLI+G  S     +A  F   GAR+V ++I EQ
Sbjct: 42  QTVLITGSGSGLGRLMAFEFGKLGARLVLWDINEQ 76


>Z81581-9|CAN86610.1|  307|Caenorhabditis elegans Hypothetical
           protein T02E1.5a protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 122 RTVLISGGSSVQALHLARNFHSAGARIVAFEIEEQ 226
           +TVLI+G  S     +A  F   GAR+V ++I EQ
Sbjct: 40  QTVLITGSGSGLGRLMAFEFGKLGARLVLWDINEQ 74


>U58749-6|AAU05599.2|  276|Caenorhabditis elegans Hypothetical
           protein B0496.3c protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -3

Query: 359 EYRTRQTPVQRF--LLKLERRQGGRPDSVWESNRTYALQQNISTTRTVPLSRMRRF*HRP 186
           +++   +P+ R   L +     G      + S+R Y     +STTR   +++ R++    
Sbjct: 186 DFKRPSSPIDRIKSLFRKNESSGTGHSDYYNSSRNYTSSNPVSTTREPYVAQYRKY---- 241

Query: 185 SGNSSPDVELALN 147
            G++S D   ALN
Sbjct: 242 PGSTSRDTSSALN 254


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
            B0496.3a protein.
          Length = 1551

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -3

Query: 359  EYRTRQTPVQRF--LLKLERRQGGRPDSVWESNRTYALQQNISTTRTVPLSRMRRF*HRP 186
            +++   +P+ R   L +     G      + S+R Y     +STTR   +++ R++    
Sbjct: 1461 DFKRPSSPIDRIKSLFRKNESSGTGHSDYYNSSRNYTSSNPVSTTREPYVAQYRKY---- 1516

Query: 185  SGNSSPDVELALN 147
             G++S D   ALN
Sbjct: 1517 PGSTSRDTSSALN 1529


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
            B0496.3b protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -3

Query: 359  EYRTRQTPVQRF--LLKLERRQGGRPDSVWESNRTYALQQNISTTRTVPLSRMRRF*HRP 186
            +++   +P+ R   L +     G      + S+R Y     +STTR   +++ R++    
Sbjct: 1502 DFKRPSSPIDRIKSLFRKNESSGTGHSDYYNSSRNYTSSNPVSTTREPYVAQYRKY---- 1557

Query: 185  SGNSSPDVELALN 147
             G++S D   ALN
Sbjct: 1558 PGSTSRDTSSALN 1570


>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 107 GYNK-PRTVLISGGSSVQALHLARNFHSAGARIVAFEIEEQ 226
           G+N+  R   +S  ++V  +HLA     A  +I  FE+EE+
Sbjct: 293 GFNRRSRRATLSNRTAVNWVHLADTMDLAANKITVFELEEK 333


>AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical
           protein C51F7.1 protein.
          Length = 947

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 543 SLATTQNFGLASPAALHTRMSSNGSSRVTTSLAQGTKHWQPM 418
           S   +QN  L+S   + T  ++  S+ +T+SL   + H QP+
Sbjct: 858 SATLSQNLHLSSFVPMTTSTTTTSSATMTSSLITASSHQQPL 899


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,460,113
Number of Sequences: 27780
Number of extensions: 284797
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)