Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_F07
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    68   9e-13
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    29   0.51 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    28   0.67 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   4.7  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 67.7 bits (158), Expect = 9e-13
 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
 Frame = +2

Query: 38  RNLTENPTTVQLDHRIXXXXXXXXXXXXWALSRGKP--LSPAARRVANAVGAMAWMQVGL 211
           RN+ +NP+ VQL+HRI            +  SR K   L    +   N V  +   Q  L
Sbjct: 370 RNMIDNPSLVQLEHRILAITTFVAACGLFIFSRAKRNILPKKIKTSINVVTGVVTAQATL 429

Query: 212 GICTLLYYVPVPVAASHQAGSLALLSLAVWLTHEI 316
           GI TL+Y VPVP+AA HQAGSL  L+ A+ L   +
Sbjct: 430 GIMTLIYVVPVPLAALHQAGSLVTLTAALSLAQRL 464


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +1

Query: 43  PHGEPDDRAAGPQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQRCRGYGLDAGRSGY 216
           PHG P  RAA P +    HP+ GD             G+ +   R RG    AGR G+
Sbjct: 162 PHGLPHRRAALPCEALGFHPNVGDYFDWYPHRPNHFGGKFDGHSRGRG----AGRGGF 215


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 357 VKDLLDSSIYSLDCAIVSACVHTVQTYQLSH 449
           V DLLD+++YSL        V  +Q Y +SH
Sbjct: 392 VADLLDTAVYSLTTTQQVQLVEDLQNYLISH 422


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 239 PVPVAASHQAGSLALLSLAVW 301
           P+P     QAGSLAL S   W
Sbjct: 622 PIPPNTLQQAGSLALASSKAW 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,204
Number of Sequences: 5004
Number of extensions: 26621
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)