Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F07
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 59 2e-09
10_01_0311 + 3441911-3443035 33 0.095
04_01_0363 + 4754650-4755912 31 0.38
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 31 0.67
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 30 0.89
01_01_0366 + 2871188-2871655 30 1.2
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 29 1.6
02_01_0737 + 5492446-5492770,5492818-5493614 29 1.6
12_01_0574 - 4697425-4698312 29 2.7
09_02_0343 + 7514514-7514948 29 2.7
04_01_0233 - 2946489-2948232,2948388-2948482 29 2.7
03_05_0534 + 25343973-25344267,25344510-25344979 29 2.7
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664 29 2.7
08_02_0229 - 14540302-14540736 28 3.6
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 28 3.6
01_03_0174 - 13442458-13442657,13443292-13443472 28 3.6
09_02_0136 + 4747985-4748419 28 4.7
07_03_0131 - 14004278-14004712 28 4.7
03_01_0313 - 2476171-2476569 28 4.7
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 28 4.7
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250... 27 6.3
03_06_0416 - 33780911-33781861 27 6.3
03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262... 27 6.3
03_05_1089 - 30304963-30304969,30305027-30305107,30306625-30306953 27 6.3
04_04_0142 - 23084685-23085128 27 8.3
>08_02_1123 +
24474434-24474538,24474800-24474860,24475050-24475477,
24475915-24476231,24476991-24477216,24477302-24477547,
24477635-24477745,24478051-24478182,24478297-24478325,
24478352-24478502
Length = 601
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +2
Query: 8 EDILSLSPWVRNLTENPTTVQLDHRIXXXXXXXXXXXXWALSRGKPLSPAARRVANAVGA 187
ED+ ++ P++RN EN +TVQL+HRI W +R + PA + + +
Sbjct: 478 EDVFAMEPFIRNFFENTSTVQLNHRILATTTLLSVGGLWLAARKVDMHPAIKSLIGSTLG 537
Query: 188 MAWMQVGLGICTLL 229
MA +QV LGI TLL
Sbjct: 538 MAALQVTLGISTLL 551
>10_01_0311 + 3441911-3443035
Length = 374
Score = 33.5 bits (73), Expect = 0.095
Identities = 19/46 (41%), Positives = 20/46 (43%)
Frame = +1
Query: 16 PLAEPVGAEPHGEPDDRAAGPQDPRHRHPDAGDGAVGALEGQAAVA 153
P AEP+GA P G P A D A GAL G AVA
Sbjct: 202 PFAEPIGAHSSDLPFGMFPGGNGRAAELPQAADAAAGALGGVGAVA 247
>04_01_0363 + 4754650-4755912
Length = 420
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = +1
Query: 49 GEPDDRAAGPQDPRHRHPDAGDGAVGALEGQAAVAGR 159
GEP R G R R PD DGAV L A VAG+
Sbjct: 199 GEPRRRRGGRGGSRPREPDGSDGAVRRL-AAAGVAGK 234
>03_05_0488 -
24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 30.7 bits (66), Expect = 0.67
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 134 RGKPLSPAARRVANAVGAMAWMQVGLG 214
+G+P SP A VA AVG M +Q G+G
Sbjct: 163 QGEPPSPRAAHVATAVGTMVVIQGGIG 189
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 30.3 bits (65), Expect = 0.89
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 25 EPVGAEPHGEPDDRAAGPQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQRCRGYGLDAG 204
E VG E D RA P++ + DG G +EG+AAV G E ++ + +
Sbjct: 114 EEVGEGFEEEYDGRAEPPKEVAGAQGE--DGEKGDVEGEAAVEGDGEEKKEQEPFAVPTS 171
Query: 205 RSGYMY 222
+ YM+
Sbjct: 172 GAFYMH 177
>01_01_0366 + 2871188-2871655
Length = 155
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 25 EPVGAEPHGEPDDRA-AGPQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQRCRGY 189
+P EP E ++A AG + + AG G G+ EG+ AGR+++++ Y
Sbjct: 13 KPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKDRAGRKKAKKSVETY 68
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Frame = +1
Query: 70 AGPQDPRHRHPDAG--------DGAVGALEGQAAVAGRQESRQRCRGYGLDAGRSG 213
+G + PR R P AG DG G G + R+R G G D+GR G
Sbjct: 89 SGARSPRRRRPGAGESVAIADGDGCEGDQRDDELALGDRRRRERGGGGGDDSGRGG 144
>02_01_0737 + 5492446-5492770,5492818-5493614
Length = 373
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 67 AAGPQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQRCRGYGL 195
A G + R HP +G G GA G + VA R E G G+
Sbjct: 68 AGGGGEVRRAHPLSGSGLTGAKHGMSFVAVRSEHGSWILGAGV 110
>12_01_0574 - 4697425-4698312
Length = 295
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 82 DPRHRHPDAGDGAVGALEGQAAVAGRQESRQRCRGYGLDAGRSGYMYVVV 231
D RH A G VGA EG+ A R R R L AG + + VV+
Sbjct: 214 DDIERHVAAAAGDVGAAEGELREAQRLRVAARRRRLWLSAGLAVLLLVVL 263
>09_02_0343 + 7514514-7514948
Length = 144
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 88 RHRHPDAG--DGAVG---ALEGQAAVAGRQESRQRCRGYGLDAGRSG 213
R H DAG DGA G EG+AA GR+ R+R R G G +G
Sbjct: 91 RRGHCDAGGGDGATGWRSGEEGEAAGGGRRHGRER-RTAGRGLGTTG 136
>04_01_0233 - 2946489-2948232,2948388-2948482
Length = 612
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +2
Query: 128 LSRGKPLSPAARRVANAV-GAMAWMQVGLG-----ICTLLYYVPVPVAASHQAGSLALLS 289
L R P +P RR A A+ W+++ L I Y + V ++ + SLA+L
Sbjct: 19 LIRRDPAAPRRRRAAYAIQDNQLWLRLLLTTFFAKILAAGYAIFVASSSGSGSSSLAMLP 78
Query: 290 LAVWLTHEIKLLKY 331
A WL + ++KY
Sbjct: 79 AASWLMFVVGVVKY 92
>03_05_0534 + 25343973-25344267,25344510-25344979
Length = 254
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +1
Query: 1 ARGGHPLAEPVGAEPHGEPDDRAAGPQDPRHRHPDAGDGAVGALEGQAAVAGRQE 165
AR G P + AE HG DD AA + R R A DG G Q++V +E
Sbjct: 2 ARAG-PSTVVLDAEHHGGGDDEAAEEEQERRR--PARDGVHGVDAPQSSVDATEE 53
>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
Length = 582
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 64 RAAGPQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQR 177
+AAG DPRH H G G G G++E+ ++
Sbjct: 34 KAAGDLDPRHHHHRVTHGGDGGGVGGGGSGGQEEADEQ 71
>08_02_0229 - 14540302-14540736
Length = 144
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +1
Query: 34 GAEPHGEPDDRAAGPQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQRC---RGYGLDAG 204
GA GE +AG Q R R P+A + +G +QR RG G DAG
Sbjct: 39 GAPVPGEVMATSAGAQGTRQRRPEAEQWRQRHCRRRGGTSGGLRGKQRAGRRRGGGCDAG 98
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 76 PQDPRHRHPDAGDGAVGALEGQAAVAGR 159
P PRH+H + DG+ A VAGR
Sbjct: 220 PARPRHQHSMSMDGSTSLASSAAGVAGR 247
>01_03_0174 - 13442458-13442657,13443292-13443472
Length = 126
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/64 (34%), Positives = 27/64 (42%)
Frame = +1
Query: 37 AEPHGEPDDRAAGPQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQRCRGYGLDAGRSGY 216
A+P + AAG R R D GDG G + AA R+ C+ AGR G
Sbjct: 4 AQPPDAGGEVAAGSDQQRRRGDDVGDG--GRVPPAAAEGERRGRLAACQAV-TKAGRRGR 60
Query: 217 MYVV 228
VV
Sbjct: 61 ALVV 64
>09_02_0136 + 4747985-4748419
Length = 144
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 88 RHRHPDAG--DGAVGAL---EGQAAVAGRQESRQRCRGYGLDAGRSG 213
R H DAG DGA G EG+AA GR+ R+R R G G +G
Sbjct: 91 RGGHCDAGGGDGATGRRSGEEGEAAGGGRRHGRER-RTAGRGLGTTG 136
>07_03_0131 - 14004278-14004712
Length = 144
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 88 RHRHPDAG--DGAVGAL---EGQAAVAGRQESRQRCRGYGLDAGRSG 213
R H DAG DGA G EG+AA GR+ R+R R G G +G
Sbjct: 91 RGGHCDAGGGDGATGRRSGEEGEAAGGGRRHGRER-RTAGRGLGTTG 136
>03_01_0313 - 2476171-2476569
Length = 132
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 16 PLAEPVGAEPHGEPDDRAAGPQDPRHRHPDAGDGA---VGALEGQAAVAGRQESRQRCRG 186
PL A+P + +G + R RHPD + GA G A G +R++CR
Sbjct: 30 PLRRQGAADPPLRREVAGSGEEQERRRHPDEEEWRRWWGGAWRGNAGEGG---ARRQCR- 85
Query: 187 YGLDA 201
+G DA
Sbjct: 86 WGRDA 90
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 76 PQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQRCRGYGLDAGRSGY 216
P P H H DAG V +AV +S +R G G GY
Sbjct: 36 PTPPPHHHHDAGAELVSGDSHHSAVRASNDSLRRGGGRGPPPSLYGY 82
>05_01_0319 +
2503963-2504176,2504316-2504376,2504691-2504769,
2504861-2504940,2505046-2505140,2505748-2505847,
2506647-2506716,2507657-2507758,2507972-2508053,
2508257-2508304,2508841-2509009,2509089-2509314,
2509961-2510131,2510200-2510438,2510600-2510684,
2510778-2510876,2510954-2511153,2511232-2511307,
2511463-2511675,2511763-2511815,2511999-2512151,
2512474-2512606
Length = 915
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 137 GKPLSPAARRVANAVGAMAWMQVGLG 214
G+P SP A A AVG M Q G+G
Sbjct: 97 GEPPSPRAAHAAAAVGTMVVFQGGIG 122
>03_06_0416 - 33780911-33781861
Length = 316
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +1
Query: 10 GHPLAEPVGAEPHGEPD------DRAAGPQDPRHRHPDAGDGAVGALEG 138
G LAEP GAE GE DR AG +D + DG GA G
Sbjct: 256 GDVLAEPAGAEGDGEVTYMRAGFDRVAGSKDSESFYMVNPDGDAGAGAG 304
>03_06_0369 +
33425251-33425778,33425864-33426051,33426152-33426251,
33426366-33426578,33426616-33426822,33426908-33427095,
33427234-33427492
Length = 560
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 141 LPLESAHSAVASVRVPVPRILWS 73
L L A +A A+ RVP PR+ WS
Sbjct: 19 LHLRDAAAAAAAARVPPPRLPWS 41
>03_05_1089 - 30304963-30304969,30305027-30305107,30306625-30306953
Length = 138
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 103 DAGDGAVGALEGQAAVAGRQESRQRCRGYGLDAGR 207
D GDG VG G VA + R R R + + GR
Sbjct: 42 DCGDGGVGVDRGWLGVAAVEGERLRKRRWTIGGGR 76
>04_04_0142 - 23084685-23085128
Length = 147
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 19 LAEPVGAEPHGEPDDRAAGPQDPRHRHPDAGDGAVGALEGQAAVAGRQESRQRCRGYGLD 198
LA+P EP EP+ ++ + G+G G + + V +E +++ + +
Sbjct: 24 LADPPEPEPEPEPEPEREREREVAAKESGGGEGKGGKVVEEKEVKAAKEKKEKEKEAKVP 83
Query: 199 AGRSG 213
G G
Sbjct: 84 RGEGG 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,538,722
Number of Sequences: 37544
Number of extensions: 205950
Number of successful extensions: 846
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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