Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_F06
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 279 3e-76
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 177 9e-46
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 169 2e-43
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 142 3e-35
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 2.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.6
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 3.4
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.4
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 4.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 4.5
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.5
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 6.0
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 6.0
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 7.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 279 bits (683), Expect = 3e-76
Identities = 127/188 (67%), Positives = 149/188 (79%)
Frame = +1
Query: 10 AILVELEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 189
A+LV+LEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+
Sbjct: 63 AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRR 122
Query: 190 EAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEP 369
EAE+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVVEP
Sbjct: 123 EAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEP 182
Query: 370 YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRF 549
YNATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT RF
Sbjct: 183 YNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRF 242
Query: 550 PGQLNADL 573
PG+LN+DL
Sbjct: 243 PGELNSDL 250
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 177 bits (431), Expect = 9e-46
Identities = 80/188 (42%), Positives = 117/188 (62%)
Frame = +1
Query: 10 AILVELEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 189
+I V+LEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+ +R+
Sbjct: 69 SIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRR 128
Query: 190 EAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEP 369
A++C LQGF ++ EY + +SV P+P+VS +VVEP
Sbjct: 129 MADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEP 188
Query: 370 YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRF 549
YN+ L+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++ +S +T LRF
Sbjct: 189 YNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRF 248
Query: 550 PGQLNADL 573
G LN DL
Sbjct: 249 AGSLNVDL 256
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 169 bits (412), Expect = 2e-43
Identities = 77/188 (40%), Positives = 113/188 (60%)
Frame = +1
Query: 10 AILVELEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 189
+I V+LEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D +R+
Sbjct: 65 SIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRR 124
Query: 190 EAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEP 369
A++C LQGF ++ EY + +SV P+P+VS +VVEP
Sbjct: 125 IADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEP 184
Query: 370 YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRF 549
YN+ L+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF
Sbjct: 185 YNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRF 244
Query: 550 PGQLNADL 573
G LN DL
Sbjct: 245 EGSLNVDL 252
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 142 bits (344), Expect = 3e-35
Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 3/191 (1%)
Frame = +1
Query: 10 AILVELEPGTMDSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDSVLDVV 183
AIL++LEP ++++ S +G ++ P+N + ++G AGNNWA G Y+ + + ++D++
Sbjct: 64 AILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMI 122
Query: 184 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDTV 360
+EA+ D L+GF ++ + YP +I+ TYSV P S VSD V
Sbjct: 123 DREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVV 182
Query: 361 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTC 540
V+PYN+ L++ +L N D +DN AL I L PT+ N LVS MS TT
Sbjct: 183 VQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTT 242
Query: 541 LRFPGQLNADL 573
LR+PG +N DL
Sbjct: 243 LRYPGYMNNDL 253
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.0
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +2
Query: 50 SARDPSDRSSAPTTSFSDSPAPVTTGLRD---TTRKVLS*SIPS*T*FARKQSHVIVYKD 220
S+ PS S + TTS S S + ++ + T+ L+ S S + A SH
Sbjct: 346 SSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSS 405
Query: 221 SNSHTPSEAVLAPVWAPFSSLKYEKNTPTES*THTLLYLHLK 346
S + S++ APV + F + + S +H+L L K
Sbjct: 406 HKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 209 VYKD-SNSHTPSEAVLAPVWAPFSSLKY 289
VYK S HT S L +W PFS L Y
Sbjct: 238 VYKTISPLHTQSTDKLYTIWTPFSELHY 265
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 159
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 127 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 216
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 472 VSACGSRCHRGLHC 431
VSAC CH+GL C
Sbjct: 210 VSACAFACHKGLSC 223
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 200 DSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 63
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 79 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 210
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 472 VSACGSRCHRGLHC 431
VSAC CH+GL C
Sbjct: 207 VSACAFSCHKGLGC 220
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 412 LCFLLTDVPKVWH 374
L FLLTD+ K+WH
Sbjct: 661 LRFLLTDLTKIWH 673
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 116 PAPDCPKTKLSGRKICPKGPERTESMVPGSSS 21
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 409 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 513
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 7.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 224 WNPCKQSHDSASLRTTSKT----ESTSSAPSV*CPLAQLLPAPDCPKTKLSG 81
++P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 355 FSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 44 TLSARDPSDRSS-APTTSFSDSPAPVTTGL 130
T SA PS SS PT++F+ S T+GL
Sbjct: 664 TSSASTPSSNSSIVPTSTFTSSGFNTTSGL 693
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,671
Number of Sequences: 5004
Number of extensions: 49787
Number of successful extensions: 182
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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